miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 20905 0.67 0.916256
Target:  5'- uACGcGGACGAAGcgcGGGAgGgGGAuCGGCc -3'
miRNA:   3'- -UGCuCCUGCUUC---UCCUaCgCCU-GCUG- -5'
5975 5' -55.2 NC_001806.1 + 21217 0.73 0.62845
Target:  5'- cGCGGaGACgGAGGAGGgcGgGGACGACc -3'
miRNA:   3'- -UGCUcCUG-CUUCUCCuaCgCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 21326 0.68 0.861869
Target:  5'- gGCGAGGACGccGGGGAcGCcGucucgccGCGACa -3'
miRNA:   3'- -UGCUCCUGCuuCUCCUaCGcC-------UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 21710 0.74 0.567355
Target:  5'- gACGAGGACGAGGAcGAcGaCGGcaACGACg -3'
miRNA:   3'- -UGCUCCUGCUUCUcCUaC-GCC--UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 24877 0.69 0.838958
Target:  5'- gGCGGGGGCcguGGAGGugcUGgGGGCGGa -3'
miRNA:   3'- -UGCUCCUGcu-UCUCCu--ACgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25106 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25140 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25174 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25208 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25242 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25276 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25310 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25344 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25378 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25412 0.7 0.758661
Target:  5'- -aGGGGGCGAGG-GGcgGUGGugGuGCg -3'
miRNA:   3'- ugCUCCUGCUUCuCCuaCGCCugC-UG- -5'
5975 5' -55.2 NC_001806.1 + 25649 0.7 0.786754
Target:  5'- gGCuGGGGCuGggGAGGggGCGGugGu- -3'
miRNA:   3'- -UGcUCCUG-CuuCUCCuaCGCCugCug -5'
5975 5' -55.2 NC_001806.1 + 25946 0.66 0.937461
Target:  5'- gUGGGGGCGggGccgcGGGA-GCGGGgGGa -3'
miRNA:   3'- uGCUCCUGCuuC----UCCUaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 26825 0.69 0.820514
Target:  5'- cGCGcGGGCGggGAGGggGCGccggagccccccGCGACc -3'
miRNA:   3'- -UGCuCCUGCuuCUCCuaCGCc-----------UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 27848 0.68 0.854938
Target:  5'- cCGGGGACGggGccGccccGCGGugGGCc -3'
miRNA:   3'- uGCUCCUGCuuCucCua--CGCCugCUG- -5'
5975 5' -55.2 NC_001806.1 + 28379 0.73 0.618216
Target:  5'- cCGGGGGCGccauguuAGGGGGUGCGGAacccccUGACc -3'
miRNA:   3'- uGCUCCUGCu------UCUCCUACGCCU------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.