miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 21217 0.73 0.62845
Target:  5'- cGCGGaGACgGAGGAGGgcGgGGACGACc -3'
miRNA:   3'- -UGCUcCUG-CUUCUCCuaCgCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 29182 0.72 0.638685
Target:  5'- uGCGGGGGCGcccccccucGAGAGGAcggGgGGAgCGACg -3'
miRNA:   3'- -UGCUCCUGC---------UUCUCCUa--CgCCU-GCUG- -5'
5975 5' -55.2 NC_001806.1 + 14921 0.72 0.648916
Target:  5'- cUGAcGACGAAGAGGGUGUccaGGGCGGg -3'
miRNA:   3'- uGCUcCUGCUUCUCCUACG---CCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 89775 0.72 0.648916
Target:  5'- cGCGcGGGGCGuGGGAGGGgcugggGCGGAcCGGCa -3'
miRNA:   3'- -UGC-UCCUGC-UUCUCCUa-----CGCCU-GCUG- -5'
5975 5' -55.2 NC_001806.1 + 65705 0.72 0.66933
Target:  5'- cCGGGGcccgcgcuucgACgGGAGAGGAUGCGGcuggGCGGCu -3'
miRNA:   3'- uGCUCC-----------UG-CUUCUCCUACGCC----UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 29647 0.72 0.670348
Target:  5'- -gGAGGAgGAGGGGGGgggagggaggaauagGCGGGCGGg -3'
miRNA:   3'- ugCUCCUgCUUCUCCUa--------------CGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 151287 0.72 0.679495
Target:  5'- cCGGGGcCGggGGgcGGcgGCGGugGGCc -3'
miRNA:   3'- uGCUCCuGCuuCU--CCuaCGCCugCUG- -5'
5975 5' -55.2 NC_001806.1 + 51092 0.72 0.679495
Target:  5'- gAUGGGaGACGAGGGGGccgccgcccUGCGGGCGcACg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCu--------ACGCCUGC-UG- -5'
5975 5' -55.2 NC_001806.1 + 143249 0.72 0.679495
Target:  5'- uGCGGGuugGggGGGGAUGUGGGCGGg -3'
miRNA:   3'- -UGCUCcugCuuCUCCUACGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 45305 0.72 0.679495
Target:  5'- cGCGGGGAgccgccCGgcGAGGAggGCGGGCG-Cg -3'
miRNA:   3'- -UGCUCCU------GCuuCUCCUa-CGCCUGCuG- -5'
5975 5' -55.2 NC_001806.1 + 95409 0.71 0.699701
Target:  5'- gGCGAGGACGAAGAccgucgccgcGGGccCGGGgGGCa -3'
miRNA:   3'- -UGCUCCUGCUUCU----------CCUacGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 6077 0.71 0.709722
Target:  5'- cCGGGGGCGGGcccGGGcgGCGGGgGGCg -3'
miRNA:   3'- uGCUCCUGCUUc--UCCuaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 151557 0.71 0.72956
Target:  5'- cCGGGGGCGgcGGGGGccgcgaugGCGGcgGCGGCg -3'
miRNA:   3'- uGCUCCUGCuuCUCCUa-------CGCC--UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 149909 0.71 0.738381
Target:  5'- gGCGGGGcuucuguggugauGCGGAGAGGggGCGGccCGAg -3'
miRNA:   3'- -UGCUCC-------------UGCUUCUCCuaCGCCu-GCUg -5'
5975 5' -55.2 NC_001806.1 + 71530 0.7 0.74906
Target:  5'- uGCGGgcGGGCGggGGGGGggGUGGAaGACc -3'
miRNA:   3'- -UGCU--CCUGCuuCUCCUa-CGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 25412 0.7 0.758661
Target:  5'- -aGGGGGCGAGG-GGcgGUGGugGuGCg -3'
miRNA:   3'- ugCUCCUGCUUCuCCuaCGCCugC-UG- -5'
5975 5' -55.2 NC_001806.1 + 9208 0.7 0.758661
Target:  5'- gGCGAGGGCgcggucgacguGgcGAGGG-GCGGGCGGu -3'
miRNA:   3'- -UGCUCCUG-----------CuuCUCCUaCGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 79044 0.7 0.76247
Target:  5'- aGCGAGGccacCGAGGAGcucccguuugugGCGGGCGGCg -3'
miRNA:   3'- -UGCUCCu---GCUUCUCcua---------CGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 120326 0.7 0.767206
Target:  5'- gACG-GGGCGGucGGGGGcgGCGGgucgucccgcucgGCGACg -3'
miRNA:   3'- -UGCuCCUGCU--UCUCCuaCGCC-------------UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 2984 0.7 0.768149
Target:  5'- cCGcGGcGCGggGAGGcgGCGG-CGGCc -3'
miRNA:   3'- uGCuCC-UGCuuCUCCuaCGCCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.