miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 4561 1.1 0.003116
Target:  5'- gACGAGGACGAAGAGGAUGCGGACGACg -3'
miRNA:   3'- -UGCUCCUGCUUCUCCUACGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 83804 0.85 0.131664
Target:  5'- cCGGGGGCGAGGAGGggGCGGGguCGGCg -3'
miRNA:   3'- uGCUCCUGCUUCUCCuaCGCCU--GCUG- -5'
5975 5' -55.2 NC_001806.1 + 34458 0.8 0.277694
Target:  5'- aACGAGGAgGAGGAGGAgaagGCGGGgGGg -3'
miRNA:   3'- -UGCUCCUgCUUCUCCUa---CGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 83265 0.78 0.326495
Target:  5'- gGCGGGcGACGGAGGGGGUuCGGGCGGg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCUAcGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 95294 0.78 0.349277
Target:  5'- cAUGGGGGCGggGGGcGcgGCGGACG-Cg -3'
miRNA:   3'- -UGCUCCUGCuuCUC-CuaCGCCUGCuG- -5'
5975 5' -55.2 NC_001806.1 + 98849 0.77 0.381375
Target:  5'- -gGAGGGCGAGGAGG--GCGG-CGACu -3'
miRNA:   3'- ugCUCCUGCUUCUCCuaCGCCuGCUG- -5'
5975 5' -55.2 NC_001806.1 + 49220 0.76 0.424171
Target:  5'- cGCGGGGaugacgacaGCGAgcuagaggcucuGGAGGAgaugGCGGGCGACg -3'
miRNA:   3'- -UGCUCC---------UGCU------------UCUCCUa---CGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 76377 0.76 0.460399
Target:  5'- aGCGAGGACGcgcuGGuGGcGUGCGuGGCGGCg -3'
miRNA:   3'- -UGCUCCUGCu---UCuCC-UACGC-CUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 137592 0.75 0.46971
Target:  5'- cCGGGGGCGAGGAGu-UGCGGaACGAg -3'
miRNA:   3'- uGCUCCUGCUUCUCcuACGCC-UGCUg -5'
5975 5' -55.2 NC_001806.1 + 143805 0.75 0.479117
Target:  5'- -aGGGGACGGagggAGGGGGUGaCGGGgGACg -3'
miRNA:   3'- ugCUCCUGCU----UCUCCUAC-GCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 147475 0.75 0.488615
Target:  5'- -aGAGGcgGCGGAGGGGA-GCGGgGCGGCg -3'
miRNA:   3'- ugCUCC--UGCUUCUCCUaCGCC-UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 57811 0.74 0.517618
Target:  5'- -gGGGGACuggaucugcgGgcGGGGGUGCGGugGGCg -3'
miRNA:   3'- ugCUCCUG----------CuuCUCCUACGCCugCUG- -5'
5975 5' -55.2 NC_001806.1 + 2833 0.74 0.517618
Target:  5'- cCGGGGGCGuGGAGGGgggcGCGGGCG-Cg -3'
miRNA:   3'- uGCUCCUGCuUCUCCUa---CGCCUGCuG- -5'
5975 5' -55.2 NC_001806.1 + 29596 0.74 0.517618
Target:  5'- gACGAccuGGACGAcgguGAGGcgGgGGGCGGCa -3'
miRNA:   3'- -UGCU---CCUGCUu---CUCCuaCgCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 6495 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 6451 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 6539 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 21710 0.74 0.567355
Target:  5'- gACGAGGACGAGGAcGAcGaCGGcaACGACg -3'
miRNA:   3'- -UGCUCCUGCUUCUcCUaC-GCC--UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 103434 0.73 0.607994
Target:  5'- -gGGGGugGGAuGAGGggGCGcGAUGGCa -3'
miRNA:   3'- ugCUCCugCUU-CUCCuaCGC-CUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 28379 0.73 0.618216
Target:  5'- cCGGGGGCGccauguuAGGGGGUGCGGAacccccUGACc -3'
miRNA:   3'- uGCUCCUGCu------UCUCCUACGCCU------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.