miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 2833 0.74 0.517618
Target:  5'- cCGGGGGCGuGGAGGGgggcGCGGGCG-Cg -3'
miRNA:   3'- uGCUCCUGCuUCUCCUa---CGCCUGCuG- -5'
5975 5' -55.2 NC_001806.1 + 2984 0.7 0.768149
Target:  5'- cCGcGGcGCGggGAGGcgGCGG-CGGCc -3'
miRNA:   3'- uGCuCC-UGCuuCUCCuaCGCCuGCUG- -5'
5975 5' -55.2 NC_001806.1 + 4561 1.1 0.003116
Target:  5'- gACGAGGACGAAGAGGAUGCGGACGACg -3'
miRNA:   3'- -UGCUCCUGCUUCUCCUACGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 4586 0.66 0.921915
Target:  5'- nCGAGGACGAGGAcccGGAguccgacgagGUcGAUGACg -3'
miRNA:   3'- uGCUCCUGCUUCU---CCUa---------CGcCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 4834 0.68 0.854938
Target:  5'- gGCGAGGccGCGggGucgggcgucGGGAUcgucCGGACGGCc -3'
miRNA:   3'- -UGCUCC--UGCuuC---------UCCUAc---GCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 5757 0.67 0.891257
Target:  5'- aACGAGGaACGGGcAGGggGCGGGgcccgggcccCGACu -3'
miRNA:   3'- -UGCUCC-UGCUUcUCCuaCGCCU----------GCUG- -5'
5975 5' -55.2 NC_001806.1 + 5872 0.67 0.916256
Target:  5'- gACGccGGGACcAAcGGGAcgGCGGGCGGCc -3'
miRNA:   3'- -UGC--UCCUGcUUcUCCUa-CGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 6077 0.71 0.709722
Target:  5'- cCGGGGGCGGGcccGGGcgGCGGGgGGCg -3'
miRNA:   3'- uGCUCCUGCUUc--UCCuaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 6202 0.68 0.854938
Target:  5'- aGCGGGaGuCGcAGAGGGccgucggaGCGGACGGCg -3'
miRNA:   3'- -UGCUC-CuGCuUCUCCUa-------CGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 6451 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 6495 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 6539 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 8610 0.67 0.910358
Target:  5'- uGCGGGGugAUGggGGGGAaGaGaGACGACa -3'
miRNA:   3'- -UGCUCC--UGCuuCUCCUaCgC-CUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 9208 0.7 0.758661
Target:  5'- gGCGAGGGCgcggucgacguGgcGAGGG-GCGGGCGGu -3'
miRNA:   3'- -UGCUCCUG-----------CuuCUCCUaCGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 10043 0.68 0.867889
Target:  5'- aGCGcGGugGggGGuuuguucuGGAacaccccgcguagcUGCGGACGGCc -3'
miRNA:   3'- -UGCuCCugCuuCU--------CCU--------------ACGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 11777 0.67 0.904224
Target:  5'- aGCGGGGAUGGuggucGAGGGaGCGGG-GAUg -3'
miRNA:   3'- -UGCUCCUGCUu----CUCCUaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 12666 0.69 0.838958
Target:  5'- uGCGAGGACGGcuGGucgucuucccGGAUGUGGGgGAg -3'
miRNA:   3'- -UGCUCCUGCU--UCu---------CCUACGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 14921 0.72 0.648916
Target:  5'- cUGAcGACGAAGAGGGUGUccaGGGCGGg -3'
miRNA:   3'- uGCUcCUGCUUCUCCUACG---CCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 15864 0.68 0.854938
Target:  5'- cGCGGGGGgcCGAGaacaAGGAcgcguUGUGGACGGCa -3'
miRNA:   3'- -UGCUCCU--GCUUc---UCCU-----ACGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 20712 0.67 0.904224
Target:  5'- uCGGGGugGGcccgccGGGGGG-GCGGGgGGCc -3'
miRNA:   3'- uGCUCCugCU------UCUCCUaCGCCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.