Results 41 - 60 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 51792 | 0.67 | 0.798522 |
Target: 5'- -gGCCGUGGcGGCCAaGUAcGccgccaccguGGCCGGCc -3' miRNA: 3'- gaUGGUACCuCCGGU-CGU-C----------UCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 64151 | 0.67 | 0.79762 |
Target: 5'- aUGCCGcGcGuGGcCCGGCAGgccaaaaAGCCGGCg -3' miRNA: 3'- gAUGGUaC-CuCC-GGUCGUC-------UCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 98028 | 0.67 | 0.78944 |
Target: 5'- -cACCGUG--GGCCGGCGG-GUgAGCg -3' miRNA: 3'- gaUGGUACcuCCGGUCGUCuCGgUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 34403 | 0.67 | 0.78944 |
Target: 5'- -gGCgGUGGccGGGCCgGGCcGGGCCGGg -3' miRNA: 3'- gaUGgUACC--UCCGG-UCGuCUCGGUCg -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 71813 | 0.67 | 0.78944 |
Target: 5'- -gACC-UGGA-GCCGGgGGGGUCGGUa -3' miRNA: 3'- gaUGGuACCUcCGGUCgUCUCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 128874 | 0.67 | 0.780217 |
Target: 5'- aUGCCuuucGUGGGGGgC-GCGGAGUCGGg -3' miRNA: 3'- gAUGG----UACCUCCgGuCGUCUCGGUCg -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 54765 | 0.68 | 0.732278 |
Target: 5'- --uCCAUGGugaugguuGGCCgcGGCAGcaccagGGCCAGCc -3' miRNA: 3'- gauGGUACCu-------CCGG--UCGUC------UCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 5490 | 0.68 | 0.732278 |
Target: 5'- -gGCCGgcgggaaGGAGGagCAGCGGAggccGCCGGCc -3' miRNA: 3'- gaUGGUa------CCUCCg-GUCGUCU----CGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 10411 | 0.68 | 0.722391 |
Target: 5'- -aGCCG-GGGGGUCccgcuGGCGGGaguGCCGGCg -3' miRNA: 3'- gaUGGUaCCUCCGG-----UCGUCU---CGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 2759 | 0.68 | 0.722391 |
Target: 5'- -gGCCAcGGGGcGCgGGCGG-GCCuGCg -3' miRNA: 3'- gaUGGUaCCUC-CGgUCGUCuCGGuCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 74119 | 0.68 | 0.716421 |
Target: 5'- uUACCG-GGGGGCCGuauaCAGcgccaaggcucuacaGGCCAGCg -3' miRNA: 3'- gAUGGUaCCUCCGGUc---GUC---------------UCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 60002 | 0.68 | 0.712426 |
Target: 5'- -gACCcgGGGgacGGCCGGgucCGGAGCCGcGCu -3' miRNA: 3'- gaUGGuaCCU---CCGGUC---GUCUCGGU-CG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 71695 | 0.68 | 0.732278 |
Target: 5'- -gGCCG-GGucucuGGCCAGCAGGGCaCAu- -3' miRNA: 3'- gaUGGUaCCu----CCGGUCGUCUCG-GUcg -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 151439 | 0.68 | 0.732278 |
Target: 5'- -cACCGgcgGGGGGCggCGGCGGGG-CGGCc -3' miRNA: 3'- gaUGGUa--CCUCCG--GUCGUCUCgGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 33004 | 0.68 | 0.732278 |
Target: 5'- -cGCCAcGGGGGCCGGCc--GUUGGCg -3' miRNA: 3'- gaUGGUaCCUCCGGUCGucuCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 57640 | 0.68 | 0.732278 |
Target: 5'- -aACCAuacgggguuUGGGGGCCcccccggaaGGCGGAGaaGGCg -3' miRNA: 3'- gaUGGU---------ACCUCCGG---------UCGUCUCggUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 78584 | 0.68 | 0.741102 |
Target: 5'- uCUACCGgcccacGGGCCAGCAcgucgccGuGCCGGCc -3' miRNA: 3'- -GAUGGUacc---UCCGGUCGU-------CuCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 83799 | 0.68 | 0.742077 |
Target: 5'- -gGCCuccGGGGGCgaggagggGGCGGGGUCGGCg -3' miRNA: 3'- gaUGGua-CCUCCGg-------UCGUCUCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 100311 | 0.68 | 0.742077 |
Target: 5'- -gGCUggGGuugGGGCgCGGCAuGGCCGGCg -3' miRNA: 3'- gaUGGuaCC---UCCG-GUCGUcUCGGUCG- -5' |
|||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 144286 | 0.68 | 0.712426 |
Target: 5'- -gGCCGc--GGGCCAGCAGAcgGCCcGCg -3' miRNA: 3'- gaUGGUaccUCCGGUCGUCU--CGGuCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home