miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 148148 0.66 0.841491
Target:  5'- -cGCCcgucacgGGGGGCgCGGCGGcGCCucuGCg -3'
miRNA:   3'- gaUGGua-----CCUCCG-GUCGUCuCGGu--CG- -5'
5976 3' -57.4 NC_001806.1 + 128529 0.66 0.841491
Target:  5'- -gGCCAUGcGGGCC-GCAGccagacggcGGCCcGCg -3'
miRNA:   3'- gaUGGUACcUCCGGuCGUC---------UCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 5100 0.66 0.841491
Target:  5'- -gGCCcgucgGUGG-GGCCcGgGGAGCCGGg -3'
miRNA:   3'- gaUGG-----UACCuCCGGuCgUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 122777 0.66 0.841491
Target:  5'- gUACCAacucGGGGGCCAGgAauuCCAGCu -3'
miRNA:   3'- gAUGGUa---CCUCCGGUCgUcucGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 129701 0.66 0.833249
Target:  5'- -cGCCucuccGGAGGCCcGgGGGGCCAcGUu -3'
miRNA:   3'- gaUGGua---CCUCCGGuCgUCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 55243 0.66 0.833249
Target:  5'- aUACaacGGAgGGUCGGCGcccGGGCCGGCc -3'
miRNA:   3'- gAUGguaCCU-CCGGUCGU---CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 4746 0.66 0.833249
Target:  5'- -gGCCGgggcccGGucGCCGGCGGcGUCGGCu -3'
miRNA:   3'- gaUGGUa-----CCucCGGUCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 147819 0.66 0.833249
Target:  5'- -cGCCGcgGGGGGCCuGUGGggagaGGCCGGg -3'
miRNA:   3'- gaUGGUa-CCUCCGGuCGUC-----UCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 128874 0.67 0.780217
Target:  5'- aUGCCuuucGUGGGGGgC-GCGGAGUCGGg -3'
miRNA:   3'- gAUGG----UACCUCCgGuCGUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 136246 0.67 0.780217
Target:  5'- gCUGCCcgcugAUGG-GGUCucGCAcGAGCCAGUc -3'
miRNA:   3'- -GAUGG-----UACCuCCGGu-CGU-CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 41551 0.67 0.780217
Target:  5'- -gACCAUGGAuauccgguagacGGgCAGgGGAGUCuGCa -3'
miRNA:   3'- gaUGGUACCU------------CCgGUCgUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 23948 0.67 0.780217
Target:  5'- -gGCCuggGGGGGCCGccggagugguccGCcGAGCgCGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU------------CGuCUCG-GUCG- -5'
5976 3' -57.4 NC_001806.1 + 143370 0.67 0.770859
Target:  5'- ------cGGGGGCCGGCAGAccgaCGGCg -3'
miRNA:   3'- gaugguaCCUCCGGUCGUCUcg--GUCG- -5'
5976 3' -57.4 NC_001806.1 + 71813 0.67 0.78944
Target:  5'- -gACC-UGGA-GCCGGgGGGGUCGGUa -3'
miRNA:   3'- gaUGGuACCUcCGGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 34403 0.67 0.78944
Target:  5'- -gGCgGUGGccGGGCCgGGCcGGGCCGGg -3'
miRNA:   3'- gaUGgUACC--UCCGG-UCGuCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 98028 0.67 0.78944
Target:  5'- -cACCGUG--GGCCGGCGG-GUgAGCg -3'
miRNA:   3'- gaUGGUACcuCCGGUCGUCuCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 64151 0.67 0.79762
Target:  5'- aUGCCGcGcGuGGcCCGGCAGgccaaaaAGCCGGCg -3'
miRNA:   3'- gAUGGUaC-CuCC-GGUCGUC-------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 51792 0.67 0.798522
Target:  5'- -gGCCGUGGcGGCCAaGUAcGccgccaccguGGCCGGCc -3'
miRNA:   3'- gaUGGUACCuCCGGU-CGU-C----------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 84093 0.67 0.798522
Target:  5'- gCUGCCGcGGAGGCCcGUcgcgccacGGuccGCCAGUc -3'
miRNA:   3'- -GAUGGUaCCUCCGGuCG--------UCu--CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 20170 0.67 0.761377
Target:  5'- -cGCCcgGGcccgcccccgGGGCCGGCgcGGAGUCGGg -3'
miRNA:   3'- gaUGGuaCC----------UCCGGUCG--UCUCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.