miRNA display CGI


Results 21 - 40 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 22562 0.66 0.833249
Target:  5'- -cGCUgacGGGGGCCGcGgGGAGCCccGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU-CgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 22875 0.66 0.824823
Target:  5'- -gGCCGUcccGGGGCUGGcCGGGGcCCGGCc -3'
miRNA:   3'- gaUGGUAc--CUCCGGUC-GUCUC-GGUCG- -5'
5976 3' -57.4 NC_001806.1 + 23948 0.67 0.780217
Target:  5'- -gGCCuggGGGGGCCGccggagugguccGCcGAGCgCGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU------------CGuCUCG-GUCG- -5'
5976 3' -57.4 NC_001806.1 + 24139 0.7 0.583902
Target:  5'- -gGCCGUGGAGuuucuggggcugcucGCCAGC---GCCGGCg -3'
miRNA:   3'- gaUGGUACCUC---------------CGGUCGucuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 24883 0.71 0.539538
Target:  5'- -gGCCGUGGAGGUgcugggGGCGGAGgCgGGCu -3'
miRNA:   3'- gaUGGUACCUCCGg-----UCGUCUC-GgUCG- -5'
5976 3' -57.4 NC_001806.1 + 27077 0.8 0.166172
Target:  5'- gUGCCcgGGcccuGGCCcGCGGAGCCGGCc -3'
miRNA:   3'- gAUGGuaCCu---CCGGuCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 29448 0.77 0.247235
Target:  5'- -gGCCGaGGAGGCCGuCAGGGCgGGCa -3'
miRNA:   3'- gaUGGUaCCUCCGGUcGUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 30638 0.71 0.549533
Target:  5'- -gGCCggGGGGGCgCGGcCAGGGUgGGCc -3'
miRNA:   3'- gaUGGuaCCUCCG-GUC-GUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 32234 0.68 0.712426
Target:  5'- -cACCcgcGcGGCCAGguGGGCCGGUa -3'
miRNA:   3'- gaUGGuacCuCCGGUCguCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 33004 0.68 0.732278
Target:  5'- -cGCCAcGGGGGCCGGCc--GUUGGCg -3'
miRNA:   3'- gaUGGUaCCUCCGGUCGucuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 33359 0.71 0.549533
Target:  5'- gCUGCag-GGGGGCCcGgAGAGCCgcGGCa -3'
miRNA:   3'- -GAUGguaCCUCCGGuCgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 34403 0.67 0.78944
Target:  5'- -gGCgGUGGccGGGCCgGGCcGGGCCGGg -3'
miRNA:   3'- gaUGgUACC--UCCGG-UCGuCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 34515 0.66 0.816222
Target:  5'- -gGCCcgGGGGGUgggAGCGcGGGCCGGg -3'
miRNA:   3'- gaUGGuaCCUCCGg--UCGU-CUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 37790 0.66 0.848745
Target:  5'- -gGCCGgggcgcGGGGGUCcGCGGGcgggggggcaaucGCCAGCg -3'
miRNA:   3'- gaUGGUa-----CCUCCGGuCGUCU-------------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 37918 0.68 0.702392
Target:  5'- -cGCCAUGGGGGCgc-CGGGGCCGu- -3'
miRNA:   3'- gaUGGUACCUCCGgucGUCUCGGUcg -5'
5976 3' -57.4 NC_001806.1 + 41224 0.71 0.519741
Target:  5'- cCUAaaGUGGcccaGGGCCucGUGGAGCCGGCg -3'
miRNA:   3'- -GAUggUACC----UCCGGu-CGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 41551 0.67 0.780217
Target:  5'- -gACCAUGGAuauccgguagacGGgCAGgGGAGUCuGCa -3'
miRNA:   3'- gaUGGUACCU------------CCgGUCgUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 46384 0.69 0.682155
Target:  5'- -cGCCAUGGAccccCCGGguG-GCCGGCu -3'
miRNA:   3'- gaUGGUACCUcc--GGUCguCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 50509 0.66 0.833249
Target:  5'- --gUCGUGGGGGCCgAGCAcGAGgCgcugGGCg -3'
miRNA:   3'- gauGGUACCUCCGG-UCGU-CUCgG----UCG- -5'
5976 3' -57.4 NC_001806.1 + 51609 0.7 0.630989
Target:  5'- gCUGCCc-GGcGGCCAGUuGAGCCGcGCc -3'
miRNA:   3'- -GAUGGuaCCuCCGGUCGuCUCGGU-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.