miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 1414 0.69 0.641254
Target:  5'- --cCCGUGGccgAGGCCcagcgaaucccgGGCGGcGCCGGCg -3'
miRNA:   3'- gauGGUACC---UCCGG------------UCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 1488 0.67 0.755632
Target:  5'- -cACCAgcggGGGGGCgucgucgucgggcucCAGCAGGGCgCGGg -3'
miRNA:   3'- gaUGGUa---CCUCCG---------------GUCGUCUCG-GUCg -5'
5976 3' -57.4 NC_001806.1 + 2222 0.66 0.849541
Target:  5'- -gGCCGUGuccGGCCcGCAcAGCCGGUu -3'
miRNA:   3'- gaUGGUACcu-CCGGuCGUcUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 2721 0.66 0.816222
Target:  5'- --cCCAgggGGucgGGGCCcucGGCGG-GCCGGCg -3'
miRNA:   3'- gauGGUa--CC---UCCGG---UCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 2759 0.68 0.722391
Target:  5'- -gGCCAcGGGGcGCgGGCGG-GCCuGCg -3'
miRNA:   3'- gaUGGUaCCUC-CGgUCGUCuCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 2988 0.69 0.661753
Target:  5'- -gGCgCggGGAGGCggCGGCGGccGCCAGCg -3'
miRNA:   3'- gaUG-GuaCCUCCG--GUCGUCu-CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 3094 0.66 0.849541
Target:  5'- -gGCgGcGGcGGCC-GCGGAGCuCGGCa -3'
miRNA:   3'- gaUGgUaCCuCCGGuCGUCUCG-GUCG- -5'
5976 3' -57.4 NC_001806.1 + 3344 0.75 0.320254
Target:  5'- -gGCCGcgGGGGGCUGGCGGgccgggccccGGCCAGCc -3'
miRNA:   3'- gaUGGUa-CCUCCGGUCGUC----------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 4746 0.66 0.833249
Target:  5'- -gGCCGgggcccGGucGCCGGCGGcGUCGGCu -3'
miRNA:   3'- gaUGGUa-----CCucCGGUCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 4879 1.11 0.001337
Target:  5'- uCUACCAUGGAGGCCAGCAGAGCCAGCu -3'
miRNA:   3'- -GAUGGUACCUCCGGUCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 5100 0.66 0.841491
Target:  5'- -gGCCcgucgGUGG-GGCCcGgGGAGCCGGg -3'
miRNA:   3'- gaUGG-----UACCuCCGGuCgUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 5490 0.68 0.732278
Target:  5'- -gGCCGgcgggaaGGAGGagCAGCGGAggccGCCGGCc -3'
miRNA:   3'- gaUGGUa------CCUCCg-GUCGUCU----CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 5655 0.68 0.692299
Target:  5'- uCUGCCAUGGgcggggcgcgAGGgCGGguGGGUCcGCg -3'
miRNA:   3'- -GAUGGUACC----------UCCgGUCguCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 9498 0.69 0.676049
Target:  5'- -aGCCggauccauugGUGGAGGgagagucgggucucuCCGGgGGGGCCAGCc -3'
miRNA:   3'- gaUGG----------UACCUCC---------------GGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 10411 0.68 0.722391
Target:  5'- -aGCCG-GGGGGUCccgcuGGCGGGaguGCCGGCg -3'
miRNA:   3'- gaUGGUaCCUCCGG-----UCGUCU---CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 10536 0.66 0.807452
Target:  5'- -gACCAccGAGGCCacuuGGC-GAGCCGGg -3'
miRNA:   3'- gaUGGUacCUCCGG----UCGuCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 20170 0.67 0.761377
Target:  5'- -cGCCcgGGcccgcccccgGGGCCGGCgcGGAGUCGGg -3'
miRNA:   3'- gaUGGuaCC----------UCCGGUCG--UCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 20329 0.69 0.651511
Target:  5'- -gGCCAaugGGGGGgCGGCAaGGCgGGCg -3'
miRNA:   3'- gaUGGUa--CCUCCgGUCGUcUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 20724 0.7 0.590017
Target:  5'- -cGCCG-GGGGGgCGG-GGGGCCGGCg -3'
miRNA:   3'- gaUGGUaCCUCCgGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 22413 0.77 0.278573
Target:  5'- -cGCCAUGGcGGCCGGCcgcuucggcuGGGGCCuGGCg -3'
miRNA:   3'- gaUGGUACCuCCGGUCG----------UCUCGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.