miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 151439 0.68 0.732278
Target:  5'- -cACCGgcgGGGGGCggCGGCGGGG-CGGCc -3'
miRNA:   3'- gaUGGUa--CCUCCG--GUCGUCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 151276 0.71 0.559584
Target:  5'- -gGCgGUGGGGGCCggGGCcgGGGGgCGGCg -3'
miRNA:   3'- gaUGgUACCUCCGG--UCG--UCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 148391 0.66 0.849541
Target:  5'- --uCCGUGGuGGGCUccGGguGGGUgGGCg -3'
miRNA:   3'- gauGGUACC-UCCGG--UCguCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 148148 0.66 0.841491
Target:  5'- -cGCCcgucacgGGGGGCgCGGCGGcGCCucuGCg -3'
miRNA:   3'- gaUGGua-----CCUCCG-GUCGUCuCGGu--CG- -5'
5976 3' -57.4 NC_001806.1 + 147819 0.66 0.833249
Target:  5'- -cGCCGcgGGGGGCCuGUGGggagaGGCCGGg -3'
miRNA:   3'- gaUGGUa-CCUCCGGuCGUC-----UCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 147771 0.71 0.529605
Target:  5'- -gGCCGcggacgcgGGGGGCCcggggcggggGGCGGAGCCuGGCa -3'
miRNA:   3'- gaUGGUa-------CCUCCGG----------UCGUCUCGG-UCG- -5'
5976 3' -57.4 NC_001806.1 + 147679 0.68 0.692299
Target:  5'- -cGCCccGGGGGCCggGGCgcgGGGGCgGGCc -3'
miRNA:   3'- gaUGGuaCCUCCGG--UCG---UCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 144963 0.68 0.742077
Target:  5'- --cCCGUGGcGGcCCGGCccGGGGCCccGGCg -3'
miRNA:   3'- gauGGUACCuCC-GGUCG--UCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 144286 0.68 0.712426
Target:  5'- -gGCCGc--GGGCCAGCAGAcgGCCcGCg -3'
miRNA:   3'- gaUGGUaccUCCGGUCGUCU--CGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 143370 0.67 0.770859
Target:  5'- ------cGGGGGCCGGCAGAccgaCGGCg -3'
miRNA:   3'- gaugguaCCUCCGGUCGUCUcg--GUCG- -5'
5976 3' -57.4 NC_001806.1 + 143126 0.67 0.798522
Target:  5'- gCUGCCggGaGGGGCC-GCGGAuggGCgGGCc -3'
miRNA:   3'- -GAUGGuaC-CUCCGGuCGUCU---CGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 141817 0.71 0.569686
Target:  5'- -gGCCA-GGAGGUgGGCGGuuaagggguucGCCAGCu -3'
miRNA:   3'- gaUGGUaCCUCCGgUCGUCu----------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 139816 0.69 0.682155
Target:  5'- -gAUCAUGGuacgGGGCCGGgAGcGCCAGg -3'
miRNA:   3'- gaUGGUACC----UCCGGUCgUCuCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 136991 0.73 0.452992
Target:  5'- --gUCAUGGcggcGGCCGGCGGGgagcGCCAGCu -3'
miRNA:   3'- gauGGUACCu---CCGGUCGUCU----CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136394 0.69 0.682155
Target:  5'- -gACCGUGGccaGCUGGCGG-GUCAGCg -3'
miRNA:   3'- gaUGGUACCuc-CGGUCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136327 0.71 0.559584
Target:  5'- -cGCgCGUGGAGucgaaggccagcGCCAGCucaaaaaacccGGGGCCGGCg -3'
miRNA:   3'- gaUG-GUACCUC------------CGGUCG-----------UCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136246 0.67 0.780217
Target:  5'- gCUGCCcgcugAUGG-GGUCucGCAcGAGCCAGUc -3'
miRNA:   3'- -GAUGG-----UACCuCCGGu-CGU-CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 135259 0.66 0.844734
Target:  5'- cCUACCcgGGGGGCCcgaAGCacugacucaaaguagGGGGCgacgaaugCGGCg -3'
miRNA:   3'- -GAUGGuaCCUCCGG---UCG---------------UCUCG--------GUCG- -5'
5976 3' -57.4 NC_001806.1 + 135102 0.71 0.539538
Target:  5'- -gACCggGGAGGggGGCGGGGgCAGCg -3'
miRNA:   3'- gaUGGuaCCUCCggUCGUCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 134845 0.66 0.816222
Target:  5'- -cGCCGaccUGGcgcaccucgcAGGCCAgGCGGAG-CAGCg -3'
miRNA:   3'- gaUGGU---ACC----------UCCGGU-CGUCUCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.