miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 4879 1.11 0.001337
Target:  5'- uCUACCAUGGAGGCCAGCAGAGCCAGCu -3'
miRNA:   3'- -GAUGGUACCUCCGGUCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 27077 0.8 0.166172
Target:  5'- gUGCCcgGGcccuGGCCcGCGGAGCCGGCc -3'
miRNA:   3'- gAUGGuaCCu---CCGGuCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 66798 0.78 0.241329
Target:  5'- aUGCCGggaGGAucacGGCCgAGCGGGGCCGGCc -3'
miRNA:   3'- gAUGGUa--CCU----CCGG-UCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 29448 0.77 0.247235
Target:  5'- -gGCCGaGGAGGCCGuCAGGGCgGGCa -3'
miRNA:   3'- gaUGGUaCCUCCGGUcGUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 22413 0.77 0.278573
Target:  5'- -cGCCAUGGcGGCCGGCcgcuucggcuGGGGCCuGGCg -3'
miRNA:   3'- gaUGGUACCuCCGGUCG----------UCUCGG-UCG- -5'
5976 3' -57.4 NC_001806.1 + 88366 0.76 0.312994
Target:  5'- -gGCCAUcGGGGccGCCGGCuGGGCUAGCg -3'
miRNA:   3'- gaUGGUA-CCUC--CGGUCGuCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 3344 0.75 0.320254
Target:  5'- -gGCCGcgGGGGGCUGGCGGgccgggccccGGCCAGCc -3'
miRNA:   3'- gaUGGUa-CCUCCGGUCGUC----------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 128427 0.74 0.387825
Target:  5'- -aACCA-GGuGGGCCAGCuggcugaugcgauGGGCCAGCa -3'
miRNA:   3'- gaUGGUaCC-UCCGGUCGu------------CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 131974 0.73 0.434782
Target:  5'- -gGCCcUGGAGcGCCAGaCcGGGCCGGUg -3'
miRNA:   3'- gaUGGuACCUC-CGGUC-GuCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 70534 0.73 0.434782
Target:  5'- -gGCCAUGGGGGaCGcGguGAGUCAGUa -3'
miRNA:   3'- gaUGGUACCUCCgGU-CguCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136991 0.73 0.452992
Target:  5'- --gUCAUGGcggcGGCCGGCGGGgagcGCCAGCu -3'
miRNA:   3'- gauGGUACCu---CCGGUCGUCU----CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 119560 0.72 0.481061
Target:  5'- -cGCCAUGGGGGCgGcugacgcagauGCGGuGCUGGCg -3'
miRNA:   3'- gaUGGUACCUCCGgU-----------CGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 74662 0.71 0.519741
Target:  5'- -gGCCAUGGAuGCCgccaagcugacGGCAGAGCUcGCc -3'
miRNA:   3'- gaUGGUACCUcCGG-----------UCGUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 41224 0.71 0.519741
Target:  5'- cCUAaaGUGGcccaGGGCCucGUGGAGCCGGCg -3'
miRNA:   3'- -GAUggUACC----UCCGGu-CGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 147771 0.71 0.529605
Target:  5'- -gGCCGcggacgcgGGGGGCCcggggcggggGGCGGAGCCuGGCa -3'
miRNA:   3'- gaUGGUa-------CCUCCGG----------UCGUCUCGG-UCG- -5'
5976 3' -57.4 NC_001806.1 + 24883 0.71 0.539538
Target:  5'- -gGCCGUGGAGGUgcugggGGCGGAGgCgGGCu -3'
miRNA:   3'- gaUGGUACCUCCGg-----UCGUCUC-GgUCG- -5'
5976 3' -57.4 NC_001806.1 + 135102 0.71 0.539538
Target:  5'- -gACCggGGAGGggGGCGGGGgCAGCg -3'
miRNA:   3'- gaUGGuaCCUCCggUCGUCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 30638 0.71 0.549533
Target:  5'- -gGCCggGGGGGCgCGGcCAGGGUgGGCc -3'
miRNA:   3'- gaUGGuaCCUCCG-GUC-GUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 33359 0.71 0.549533
Target:  5'- gCUGCag-GGGGGCCcGgAGAGCCgcGGCa -3'
miRNA:   3'- -GAUGguaCCUCCGGuCgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 151276 0.71 0.559584
Target:  5'- -gGCgGUGGGGGCCggGGCcgGGGGgCGGCg -3'
miRNA:   3'- gaUGgUACCUCCGG--UCG--UCUCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.