miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 151276 0.71 0.559584
Target:  5'- -gGCgGUGGGGGCCggGGCcgGGGGgCGGCg -3'
miRNA:   3'- gaUGgUACCUCCGG--UCG--UCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 84841 0.71 0.566651
Target:  5'- cCUAUCAcggcaaGGAGcGCCGGCGGucgcgcuccucugcGGCCGGCg -3'
miRNA:   3'- -GAUGGUa-----CCUC-CGGUCGUC--------------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 141817 0.71 0.569686
Target:  5'- -gGCCA-GGAGGUgGGCGGuuaagggguucGCCAGCu -3'
miRNA:   3'- gaUGGUaCCUCCGgUCGUCu----------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 132700 0.71 0.57374
Target:  5'- -cGCgGUGGGGGCCAGgGucguccuccccccgcGAGCUGGCc -3'
miRNA:   3'- gaUGgUACCUCCGGUCgU---------------CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 70643 0.7 0.579833
Target:  5'- -cACC-UGGGGGUguGCGacGAGCUGGCg -3'
miRNA:   3'- gaUGGuACCUCCGguCGU--CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 24139 0.7 0.583902
Target:  5'- -gGCCGUGGAGuuucuggggcugcucGCCAGC---GCCGGCg -3'
miRNA:   3'- gaUGGUACCUC---------------CGGUCGucuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 20724 0.7 0.590017
Target:  5'- -cGCCG-GGGGGgCGG-GGGGCCGGCg -3'
miRNA:   3'- gaUGGUaCCUCCgGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 57022 0.7 0.61047
Target:  5'- gUGCCAggcacugGGuGGCCGGgccCGGGGCCGGg -3'
miRNA:   3'- gAUGGUa------CCuCCGGUC---GUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 66426 0.7 0.619699
Target:  5'- gUGCgGUGGGGcGCCcccGCAGGuccggcuGCCAGCg -3'
miRNA:   3'- gAUGgUACCUC-CGGu--CGUCU-------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 51609 0.7 0.630989
Target:  5'- gCUGCCc-GGcGGCCAGUuGAGCCGcGCc -3'
miRNA:   3'- -GAUGGuaCCuCCGGUCGuCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 84433 0.7 0.630989
Target:  5'- -aGCCcgGGgacggGGGCCGGUuuguGAGCCuGCu -3'
miRNA:   3'- gaUGGuaCC-----UCCGGUCGu---CUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 85981 0.7 0.630989
Target:  5'- cCU-CCcgGGGGGUCGGCAG-GCgaCGGCg -3'
miRNA:   3'- -GAuGGuaCCUCCGGUCGUCuCG--GUCG- -5'
5976 3' -57.4 NC_001806.1 + 1414 0.69 0.641254
Target:  5'- --cCCGUGGccgAGGCCcagcgaaucccgGGCGGcGCCGGCg -3'
miRNA:   3'- gauGGUACC---UCCGG------------UCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 20329 0.69 0.651511
Target:  5'- -gGCCAaugGGGGGgCGGCAaGGCgGGCg -3'
miRNA:   3'- gaUGGUa--CCUCCgGUCGUcUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 2988 0.69 0.661753
Target:  5'- -gGCgCggGGAGGCggCGGCGGccGCCAGCg -3'
miRNA:   3'- gaUG-GuaCCUCCG--GUCGUCu-CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 58069 0.69 0.661753
Target:  5'- -gGCCcgGGAGGCCgAGCuc--CCGGCu -3'
miRNA:   3'- gaUGGuaCCUCCGG-UCGucucGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 9498 0.69 0.676049
Target:  5'- -aGCCggauccauugGUGGAGGgagagucgggucucuCCGGgGGGGCCAGCc -3'
miRNA:   3'- gaUGG----------UACCUCC---------------GGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136394 0.69 0.682155
Target:  5'- -gACCGUGGccaGCUGGCGG-GUCAGCg -3'
miRNA:   3'- gaUGGUACCuc-CGGUCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 132616 0.69 0.682155
Target:  5'- -cACCGUGccGGCCacGGCcGAGUCGGCa -3'
miRNA:   3'- gaUGGUACcuCCGG--UCGuCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 46384 0.69 0.682155
Target:  5'- -cGCCAUGGAccccCCGGguG-GCCGGCu -3'
miRNA:   3'- gaUGGUACCUcc--GGUCguCuCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.