Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 77365 | 0.66 | 0.816222 |
Target: 5'- -cGCCAaGGccacAGGCCAGaCGGGcGCgGGCg -3' miRNA: 3'- gaUGGUaCC----UCCGGUC-GUCU-CGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 134845 | 0.66 | 0.816222 |
Target: 5'- -cGCCGaccUGGcgcaccucgcAGGCCAgGCGGAG-CAGCg -3' miRNA: 3'- gaUGGU---ACC----------UCCGGU-CGUCUCgGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 2721 | 0.66 | 0.816222 |
Target: 5'- --cCCAgggGGucgGGGCCcucGGCGG-GCCGGCg -3' miRNA: 3'- gauGGUa--CC---UCCGG---UCGUCuCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 65619 | 0.66 | 0.807452 |
Target: 5'- gUACaCGUGGuGGCCgugGGCgagaGGGGCCccGGCg -3' miRNA: 3'- gAUG-GUACCuCCGG---UCG----UCUCGG--UCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 10536 | 0.66 | 0.807452 |
Target: 5'- -gACCAccGAGGCCacuuGGC-GAGCCGGg -3' miRNA: 3'- gaUGGUacCUCCGG----UCGuCUCGGUCg -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 73457 | 0.66 | 0.807452 |
Target: 5'- -gGCCggGGuGGCCGGCccGGCCGccGCc -3' miRNA: 3'- gaUGGuaCCuCCGGUCGucUCGGU--CG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 133251 | 0.66 | 0.807452 |
Target: 5'- -gGCCGUGGGaGCCGuGCuuAGGGCCAacGCc -3' miRNA: 3'- gaUGGUACCUcCGGU-CG--UCUCGGU--CG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 55615 | 0.66 | 0.804789 |
Target: 5'- -gGgCGUGGAGGUgGGCuuggggguuguuggGGGGCUGGCc -3' miRNA: 3'- gaUgGUACCUCCGgUCG--------------UCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 143126 | 0.67 | 0.798522 |
Target: 5'- gCUGCCggGaGGGGCC-GCGGAuggGCgGGCc -3' miRNA: 3'- -GAUGGuaC-CUCCGGuCGUCU---CGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 84093 | 0.67 | 0.798522 |
Target: 5'- gCUGCCGcGGAGGCCcGUcgcgccacGGuccGCCAGUc -3' miRNA: 3'- -GAUGGUaCCUCCGGuCG--------UCu--CGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 51792 | 0.67 | 0.798522 |
Target: 5'- -gGCCGUGGcGGCCAaGUAcGccgccaccguGGCCGGCc -3' miRNA: 3'- gaUGGUACCuCCGGU-CGU-C----------UCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 64151 | 0.67 | 0.79762 |
Target: 5'- aUGCCGcGcGuGGcCCGGCAGgccaaaaAGCCGGCg -3' miRNA: 3'- gAUGGUaC-CuCC-GGUCGUC-------UCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 98028 | 0.67 | 0.78944 |
Target: 5'- -cACCGUG--GGCCGGCGG-GUgAGCg -3' miRNA: 3'- gaUGGUACcuCCGGUCGUCuCGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 34403 | 0.67 | 0.78944 |
Target: 5'- -gGCgGUGGccGGGCCgGGCcGGGCCGGg -3' miRNA: 3'- gaUGgUACC--UCCGG-UCGuCUCGGUCg -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 71813 | 0.67 | 0.78944 |
Target: 5'- -gACC-UGGA-GCCGGgGGGGUCGGUa -3' miRNA: 3'- gaUGGuACCUcCGGUCgUCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 128874 | 0.67 | 0.780217 |
Target: 5'- aUGCCuuucGUGGGGGgC-GCGGAGUCGGg -3' miRNA: 3'- gAUGG----UACCUCCgGuCGUCUCGGUCg -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 136246 | 0.67 | 0.780217 |
Target: 5'- gCUGCCcgcugAUGG-GGUCucGCAcGAGCCAGUc -3' miRNA: 3'- -GAUGG-----UACCuCCGGu-CGU-CUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 41551 | 0.67 | 0.780217 |
Target: 5'- -gACCAUGGAuauccgguagacGGgCAGgGGAGUCuGCa -3' miRNA: 3'- gaUGGUACCU------------CCgGUCgUCUCGGuCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 23948 | 0.67 | 0.780217 |
Target: 5'- -gGCCuggGGGGGCCGccggagugguccGCcGAGCgCGGCg -3' miRNA: 3'- gaUGGua-CCUCCGGU------------CGuCUCG-GUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 143370 | 0.67 | 0.770859 |
Target: 5'- ------cGGGGGCCGGCAGAccgaCGGCg -3' miRNA: 3'- gaugguaCCUCCGGUCGUCUcg--GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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