miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 20170 0.67 0.761377
Target:  5'- -cGCCcgGGcccgcccccgGGGCCGGCgcGGAGUCGGg -3'
miRNA:   3'- gaUGGuaCC----------UCCGGUCG--UCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 107023 0.67 0.761377
Target:  5'- gCUugCcgGGuuGGCCGcccGCGGGGCC-GCg -3'
miRNA:   3'- -GAugGuaCCu-CCGGU---CGUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 92933 0.67 0.761377
Target:  5'- -gGCC-UGGAGGCC---GGGGCCcGCg -3'
miRNA:   3'- gaUGGuACCUCCGGucgUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 63345 0.67 0.75851
Target:  5'- -gAUCGcuUGGAGGCCggauggacgaucucGGUgcagagguuGGAGCCGGCg -3'
miRNA:   3'- gaUGGU--ACCUCCGG--------------UCG---------UCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 1488 0.67 0.755632
Target:  5'- -cACCAgcggGGGGGCgucgucgucgggcucCAGCAGGGCgCGGg -3'
miRNA:   3'- gaUGGUa---CCUCCG---------------GUCGUCUCG-GUCg -5'
5976 3' -57.4 NC_001806.1 + 94198 0.67 0.751781
Target:  5'- -gGCC-UGGAGGCCcaGGCcGGGGCCu-- -3'
miRNA:   3'- gaUGGuACCUCCGG--UCG-UCUCGGucg -5'
5976 3' -57.4 NC_001806.1 + 144963 0.68 0.742077
Target:  5'- --cCCGUGGcGGcCCGGCccGGGGCCccGGCg -3'
miRNA:   3'- gauGGUACCuCC-GGUCG--UCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 100311 0.68 0.742077
Target:  5'- -gGCUggGGuugGGGCgCGGCAuGGCCGGCg -3'
miRNA:   3'- gaUGGuaCC---UCCG-GUCGUcUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 83799 0.68 0.742077
Target:  5'- -gGCCuccGGGGGCgaggagggGGCGGGGUCGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGg-------UCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 78584 0.68 0.741102
Target:  5'- uCUACCGgcccacGGGCCAGCAcgucgccGuGCCGGCc -3'
miRNA:   3'- -GAUGGUacc---UCCGGUCGU-------CuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 5490 0.68 0.732278
Target:  5'- -gGCCGgcgggaaGGAGGagCAGCGGAggccGCCGGCc -3'
miRNA:   3'- gaUGGUa------CCUCCg-GUCGUCU----CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 54765 0.68 0.732278
Target:  5'- --uCCAUGGugaugguuGGCCgcGGCAGcaccagGGCCAGCc -3'
miRNA:   3'- gauGGUACCu-------CCGG--UCGUC------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 71695 0.68 0.732278
Target:  5'- -gGCCG-GGucucuGGCCAGCAGGGCaCAu- -3'
miRNA:   3'- gaUGGUaCCu----CCGGUCGUCUCG-GUcg -5'
5976 3' -57.4 NC_001806.1 + 151439 0.68 0.732278
Target:  5'- -cACCGgcgGGGGGCggCGGCGGGG-CGGCc -3'
miRNA:   3'- gaUGGUa--CCUCCG--GUCGUCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 33004 0.68 0.732278
Target:  5'- -cGCCAcGGGGGCCGGCc--GUUGGCg -3'
miRNA:   3'- gaUGGUaCCUCCGGUCGucuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 57640 0.68 0.732278
Target:  5'- -aACCAuacgggguuUGGGGGCCcccccggaaGGCGGAGaaGGCg -3'
miRNA:   3'- gaUGGU---------ACCUCCGG---------UCGUCUCggUCG- -5'
5976 3' -57.4 NC_001806.1 + 10411 0.68 0.722391
Target:  5'- -aGCCG-GGGGGUCccgcuGGCGGGaguGCCGGCg -3'
miRNA:   3'- gaUGGUaCCUCCGG-----UCGUCU---CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 2759 0.68 0.722391
Target:  5'- -gGCCAcGGGGcGCgGGCGG-GCCuGCg -3'
miRNA:   3'- gaUGGUaCCUC-CGgUCGUCuCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 74119 0.68 0.716421
Target:  5'- uUACCG-GGGGGCCGuauaCAGcgccaaggcucuacaGGCCAGCg -3'
miRNA:   3'- gAUGGUaCCUCCGGUc---GUC---------------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 144286 0.68 0.712426
Target:  5'- -gGCCGc--GGGCCAGCAGAcgGCCcGCg -3'
miRNA:   3'- gaUGGUaccUCCGGUCGUCU--CGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.