miRNA display CGI


Results 41 - 60 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 51792 0.67 0.798522
Target:  5'- -gGCCGUGGcGGCCAaGUAcGccgccaccguGGCCGGCc -3'
miRNA:   3'- gaUGGUACCuCCGGU-CGU-C----------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 54765 0.68 0.732278
Target:  5'- --uCCAUGGugaugguuGGCCgcGGCAGcaccagGGCCAGCc -3'
miRNA:   3'- gauGGUACCu-------CCGG--UCGUC------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 55243 0.66 0.833249
Target:  5'- aUACaacGGAgGGUCGGCGcccGGGCCGGCc -3'
miRNA:   3'- gAUGguaCCU-CCGGUCGU---CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 55615 0.66 0.804789
Target:  5'- -gGgCGUGGAGGUgGGCuuggggguuguuggGGGGCUGGCc -3'
miRNA:   3'- gaUgGUACCUCCGgUCG--------------UCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 57022 0.7 0.61047
Target:  5'- gUGCCAggcacugGGuGGCCGGgccCGGGGCCGGg -3'
miRNA:   3'- gAUGGUa------CCuCCGGUC---GUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 57640 0.68 0.732278
Target:  5'- -aACCAuacgggguuUGGGGGCCcccccggaaGGCGGAGaaGGCg -3'
miRNA:   3'- gaUGGU---------ACCUCCGG---------UCGUCUCggUCG- -5'
5976 3' -57.4 NC_001806.1 + 58069 0.69 0.661753
Target:  5'- -gGCCcgGGAGGCCgAGCuc--CCGGCu -3'
miRNA:   3'- gaUGGuaCCUCCGG-UCGucucGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 60002 0.68 0.712426
Target:  5'- -gACCcgGGGgacGGCCGGgucCGGAGCCGcGCu -3'
miRNA:   3'- gaUGGuaCCU---CCGGUC---GUCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 63345 0.67 0.75851
Target:  5'- -gAUCGcuUGGAGGCCggauggacgaucucGGUgcagagguuGGAGCCGGCg -3'
miRNA:   3'- gaUGGU--ACCUCCGG--------------UCG---------UCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 64151 0.67 0.79762
Target:  5'- aUGCCGcGcGuGGcCCGGCAGgccaaaaAGCCGGCg -3'
miRNA:   3'- gAUGGUaC-CuCC-GGUCGUC-------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 65619 0.66 0.807452
Target:  5'- gUACaCGUGGuGGCCgugGGCgagaGGGGCCccGGCg -3'
miRNA:   3'- gAUG-GUACCuCCGG---UCG----UCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 66426 0.7 0.619699
Target:  5'- gUGCgGUGGGGcGCCcccGCAGGuccggcuGCCAGCg -3'
miRNA:   3'- gAUGgUACCUC-CGGu--CGUCU-------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 66798 0.78 0.241329
Target:  5'- aUGCCGggaGGAucacGGCCgAGCGGGGCCGGCc -3'
miRNA:   3'- gAUGGUa--CCU----CCGG-UCGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 67236 0.69 0.682155
Target:  5'- -gGCCAggugaGGcAGGUCGGCGGGGUgccgCAGCg -3'
miRNA:   3'- gaUGGUa----CC-UCCGGUCGUCUCG----GUCG- -5'
5976 3' -57.4 NC_001806.1 + 70534 0.73 0.434782
Target:  5'- -gGCCAUGGGGGaCGcGguGAGUCAGUa -3'
miRNA:   3'- gaUGGUACCUCCgGU-CguCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 70643 0.7 0.579833
Target:  5'- -cACC-UGGGGGUguGCGacGAGCUGGCg -3'
miRNA:   3'- gaUGGuACCUCCGguCGU--CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 71695 0.68 0.732278
Target:  5'- -gGCCG-GGucucuGGCCAGCAGGGCaCAu- -3'
miRNA:   3'- gaUGGUaCCu----CCGGUCGUCUCG-GUcg -5'
5976 3' -57.4 NC_001806.1 + 71813 0.67 0.78944
Target:  5'- -gACC-UGGA-GCCGGgGGGGUCGGUa -3'
miRNA:   3'- gaUGGuACCUcCGGUCgUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 73457 0.66 0.807452
Target:  5'- -gGCCggGGuGGCCGGCccGGCCGccGCc -3'
miRNA:   3'- gaUGGuaCCuCCGGUCGucUCGGU--CG- -5'
5976 3' -57.4 NC_001806.1 + 74119 0.68 0.716421
Target:  5'- uUACCG-GGGGGCCGuauaCAGcgccaaggcucuacaGGCCAGCg -3'
miRNA:   3'- gAUGGUaCCUCCGGUc---GUC---------------UCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.