miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 100632 0.67 0.483256
Target:  5'- cCGGCGaUCCCGGCcugCCgccgcCGCuCGGCc -3'
miRNA:   3'- uGCCGCaGGGGCCGca-GGa----GCG-GCCG- -5'
5976 5' -65.4 NC_001806.1 + 2451 0.67 0.474478
Target:  5'- -aGGCGgcCCCCGGCGgCCcCGUgGGg -3'
miRNA:   3'- ugCCGCa-GGGGCCGCaGGaGCGgCCg -5'
5976 5' -65.4 NC_001806.1 + 52828 0.67 0.474478
Target:  5'- -aGGUG-CCCCcGCG-CCUC-CCGGCc -3'
miRNA:   3'- ugCCGCaGGGGcCGCaGGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 65652 0.67 0.474478
Target:  5'- gGCGGCcUCCCCcugGGUGgcugcgCUggggcCGCCGGCc -3'
miRNA:   3'- -UGCCGcAGGGG---CCGCa-----GGa----GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 86052 0.67 0.474478
Target:  5'- gGCGGgcuCGUCCCCuggggcggcGGCGUCUagcUCGCggagGGCg -3'
miRNA:   3'- -UGCC---GCAGGGG---------CCGCAGG---AGCGg---CCG- -5'
5976 5' -65.4 NC_001806.1 + 2519 0.67 0.474478
Target:  5'- gGCGGCGggggcgggCCCGGCG-CaC-CGCgCGGCg -3'
miRNA:   3'- -UGCCGCag------GGGCCGCaG-GaGCG-GCCG- -5'
5976 5' -65.4 NC_001806.1 + 76824 0.67 0.474478
Target:  5'- aGCGGCGacggCCCgGGCcUCCUaCGCgacagGGCg -3'
miRNA:   3'- -UGCCGCa---GGGgCCGcAGGA-GCGg----CCG- -5'
5976 5' -65.4 NC_001806.1 + 94946 0.67 0.46578
Target:  5'- cUGGC-UCgcgUCCGGCGaCCgCGCCGGCc -3'
miRNA:   3'- uGCCGcAG---GGGCCGCaGGaGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 10416 0.67 0.46578
Target:  5'- -gGGgGUCCCgcUGGCGggagUGCCGGCg -3'
miRNA:   3'- ugCCgCAGGG--GCCGCaggaGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 94008 0.67 0.457166
Target:  5'- gAUGGcCG-CCCCGGUGUCCgaGCCcaccguGGCc -3'
miRNA:   3'- -UGCC-GCaGGGGCCGCAGGagCGG------CCG- -5'
5976 5' -65.4 NC_001806.1 + 64866 0.67 0.457166
Target:  5'- cCGcGCGUCCCgggccaCGGCGggaucggCCgcaagaccagCGCCGGCc -3'
miRNA:   3'- uGC-CGCAGGG------GCCGCa------GGa---------GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 145169 0.67 0.457166
Target:  5'- -gGGCG-CCCCGGUGUCgUucaacaaagaCGCCGcGUu -3'
miRNA:   3'- ugCCGCaGGGGCCGCAGgA----------GCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 73057 0.67 0.456309
Target:  5'- -gGGCcgcgGUCCCCGccuccguuccggaGCcuGUCCUCGCCucGGCa -3'
miRNA:   3'- ugCCG----CAGGGGC-------------CG--CAGGAGCGG--CCG- -5'
5976 5' -65.4 NC_001806.1 + 120865 0.67 0.452038
Target:  5'- gGCGGCcccuggcgccgccugGUcCCCCGGgGaCCUUGCCccGGCc -3'
miRNA:   3'- -UGCCG---------------CA-GGGGCCgCaGGAGCGG--CCG- -5'
5976 5' -65.4 NC_001806.1 + 44447 0.67 0.448638
Target:  5'- gGCcGCGggCCCGGCGUCCgCGUgGaGCa -3'
miRNA:   3'- -UGcCGCagGGGCCGCAGGaGCGgC-CG- -5'
5976 5' -65.4 NC_001806.1 + 37340 0.67 0.448638
Target:  5'- cGCGGuCGUCCCgauaaUGGgGUCCUgggggCGCagCGGCa -3'
miRNA:   3'- -UGCC-GCAGGG-----GCCgCAGGA-----GCG--GCCG- -5'
5976 5' -65.4 NC_001806.1 + 115512 0.67 0.448638
Target:  5'- gGCGGUGUCCaCGGCcaCCgcCGCCaGCg -3'
miRNA:   3'- -UGCCGCAGGgGCCGcaGGa-GCGGcCG- -5'
5976 5' -65.4 NC_001806.1 + 124495 0.67 0.446943
Target:  5'- uGCGGuCGgacgccgucucgCUCCGGCGggccgUCCUCGCCGa- -3'
miRNA:   3'- -UGCC-GCa-----------GGGGCCGC-----AGGAGCGGCcg -5'
5976 5' -65.4 NC_001806.1 + 27459 0.67 0.440198
Target:  5'- -gGGCGgCCCCGGcCGcCCUUcccgcuuCCGGCa -3'
miRNA:   3'- ugCCGCaGGGGCC-GCaGGAGc------GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 17449 0.67 0.440198
Target:  5'- cUGG-GUaCCCCGGuCGUCgUUCGuCCGGCc -3'
miRNA:   3'- uGCCgCA-GGGGCC-GCAG-GAGC-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.