miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 93585 0.66 0.510041
Target:  5'- uCGGCGgcccgggggCCCCGGgacCGgcaUUUGCCGGCc -3'
miRNA:   3'- uGCCGCa--------GGGGCC---GCag-GAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3139 0.66 0.510041
Target:  5'- cGCGGgGcccagggCCCCGGCGaCCagGCucaCGGCg -3'
miRNA:   3'- -UGCCgCa------GGGGCCGCaGGagCG---GCCG- -5'
5976 5' -65.4 NC_001806.1 + 87297 0.66 0.510041
Target:  5'- cCGGCgGUCuCCCGcGCGcCCU--CCGGCu -3'
miRNA:   3'- uGCCG-CAG-GGGC-CGCaGGAgcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 151116 0.66 0.510041
Target:  5'- cGCGGgGggCUCCGGCGcccccUCCcCGCCcGCg -3'
miRNA:   3'- -UGCCgCa-GGGGCCGC-----AGGaGCGGcCG- -5'
5976 5' -65.4 NC_001806.1 + 638 0.66 0.510041
Target:  5'- cCGGCcccagcccUCCCCGGCcccaGcCCUCcCCGGCc -3'
miRNA:   3'- uGCCGc-------AGGGGCCG----CaGGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 140027 0.66 0.510041
Target:  5'- cGCGGCGaaagcgCCCgGaGCG-CCacgGCCGGCa -3'
miRNA:   3'- -UGCCGCa-----GGGgC-CGCaGGag-CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 99975 0.66 0.506433
Target:  5'- cGCGGCGcgccucgagccUCCCCGGgguaguacggguaGUCCgCGuCCGGUu -3'
miRNA:   3'- -UGCCGC-----------AGGGGCCg------------CAGGaGC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 24235 0.66 0.504633
Target:  5'- cGCGGUGUCgcggcagcacgccuaCCUGGCGUgcgagcugcugCC-CGCCGuGCa -3'
miRNA:   3'- -UGCCGCAG---------------GGGCCGCA-----------GGaGCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 22861 0.66 0.501041
Target:  5'- gACGGCGaCCUggCGGcCGUCCcgggGCUGGCc -3'
miRNA:   3'- -UGCCGCaGGG--GCC-GCAGGag--CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 68255 0.66 0.501041
Target:  5'- -gGGCGgacgaCCCGGCGuUUCUgGCCacGGCc -3'
miRNA:   3'- ugCCGCag---GGGCCGC-AGGAgCGG--CCG- -5'
5976 5' -65.4 NC_001806.1 + 73157 0.66 0.501041
Target:  5'- cACGGU---UCCGGCGUCCUCacagGCCcucgaGGCg -3'
miRNA:   3'- -UGCCGcagGGGCCGCAGGAG----CGG-----CCG- -5'
5976 5' -65.4 NC_001806.1 + 12842 0.66 0.492111
Target:  5'- -aGGCGUCg-CGGCGUCCUgGaucgaCGGUa -3'
miRNA:   3'- ugCCGCAGggGCCGCAGGAgCg----GCCG- -5'
5976 5' -65.4 NC_001806.1 + 20370 0.66 0.492111
Target:  5'- cCGcCGUCCCguugguccCGGCGUCCg-GCgGGCg -3'
miRNA:   3'- uGCcGCAGGG--------GCCGCAGGagCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 4307 0.66 0.492111
Target:  5'- aGCGGC--CCgUGGCGUCgCg-GCCGGCc -3'
miRNA:   3'- -UGCCGcaGGgGCCGCAG-GagCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 144138 0.66 0.492111
Target:  5'- cCGGCc-CCCCGcGaGUCCaccCGCCGGCc -3'
miRNA:   3'- uGCCGcaGGGGC-CgCAGGa--GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 134981 0.67 0.486789
Target:  5'- cGCGGCGgccaUCCCGGUGcccgaugcccccgcCCUgGuCCGGCg -3'
miRNA:   3'- -UGCCGCa---GGGGCCGCa-------------GGAgC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 132904 0.67 0.483256
Target:  5'- cUGGCGgCCCUGGcCGaCCUCggggggagcggGCUGGCg -3'
miRNA:   3'- uGCCGCaGGGGCC-GCaGGAG-----------CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 65460 0.67 0.483256
Target:  5'- cGCGGC--CCCCGG-GUCCUgggggCGCCcGCg -3'
miRNA:   3'- -UGCCGcaGGGGCCgCAGGA-----GCGGcCG- -5'
5976 5' -65.4 NC_001806.1 + 127534 0.67 0.483256
Target:  5'- cACGGgGUCCUCGGCGggCUCGg-GGUc -3'
miRNA:   3'- -UGCCgCAGGGGCCGCagGAGCggCCG- -5'
5976 5' -65.4 NC_001806.1 + 4368 0.67 0.483256
Target:  5'- cGCGGaggCCgCgGGgGUCCUCGCCGccGCc -3'
miRNA:   3'- -UGCCgcaGG-GgCCgCAGGAGCGGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.