miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 22663 0.72 0.228718
Target:  5'- uACGGCG-CCgCGGgGaUCCUCGCCgcccuggGGCg -3'
miRNA:   3'- -UGCCGCaGGgGCCgC-AGGAGCGG-------CCG- -5'
5976 5' -65.4 NC_001806.1 + 1448 0.72 0.229236
Target:  5'- cCGGCGgcagggcCCCCGGgccguCGUCgUCGCCGcGCa -3'
miRNA:   3'- uGCCGCa------GGGGCC-----GCAGgAGCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 149257 0.71 0.256429
Target:  5'- -gGGgGUCCCaCGGCGUCCcccaaauaUgGCgGGCg -3'
miRNA:   3'- ugCCgCAGGG-GCCGCAGG--------AgCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 120755 0.71 0.256429
Target:  5'- aGCGGCGccuucCCCCGGCcaCCUCGCCc-- -3'
miRNA:   3'- -UGCCGCa----GGGGCCGcaGGAGCGGccg -5'
5976 5' -65.4 NC_001806.1 + 20651 0.71 0.256429
Target:  5'- cGCGGCcacggGcCCCCGGCGUgCCggCGUCGGg -3'
miRNA:   3'- -UGCCG-----CaGGGGCCGCA-GGa-GCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 65394 0.71 0.262175
Target:  5'- gACGGCGgUCCCGcCGUCgCU-GCCGGCu -3'
miRNA:   3'- -UGCCGCaGGGGCcGCAG-GAgCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 25909 0.71 0.262175
Target:  5'- gGCGGCgGUCCgggCGGCGUgCgcgCGCgCGGCg -3'
miRNA:   3'- -UGCCG-CAGGg--GCCGCAgGa--GCG-GCCG- -5'
5976 5' -65.4 NC_001806.1 + 22176 0.71 0.262175
Target:  5'- -gGGCG-CCCCGGCGgCCgUGUgGGCg -3'
miRNA:   3'- ugCCGCaGGGGCCGCaGGaGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 24782 0.71 0.273981
Target:  5'- cGCGGCGacgacgacggCCCgGGgGcCCUgcCGCCGGCg -3'
miRNA:   3'- -UGCCGCa---------GGGgCCgCaGGA--GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 96380 0.71 0.273981
Target:  5'- -gGGCGcCCCCGcGCGggggCGCCGGUg -3'
miRNA:   3'- ugCCGCaGGGGC-CGCaggaGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 38055 0.71 0.280042
Target:  5'- uGCGaCG-CCCaCGGCGUCCgcCGCgGGCa -3'
miRNA:   3'- -UGCcGCaGGG-GCCGCAGGa-GCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 126255 0.71 0.286209
Target:  5'- -gGGCGUCCCUGGauauucucgucUGUCCUCGggacauucaCGGCu -3'
miRNA:   3'- ugCCGCAGGGGCC-----------GCAGGAGCg--------GCCG- -5'
5976 5' -65.4 NC_001806.1 + 9276 0.71 0.286209
Target:  5'- cGCGauuagcuCGUCUCCGaCGUCCaccUCGCCGGCg -3'
miRNA:   3'- -UGCc------GCAGGGGCcGCAGG---AGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 5461 0.71 0.286209
Target:  5'- -gGGCGUCCUCGGgcucauauaGUCCcagggGCCGGCg -3'
miRNA:   3'- ugCCGCAGGGGCCg--------CAGGag---CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 20292 0.71 0.286209
Target:  5'- cCGGCGgCCCCgcccccuuggGGCgGUCCcgccCGCCGGCc -3'
miRNA:   3'- uGCCGCaGGGG----------CCG-CAGGa---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 130464 0.7 0.298862
Target:  5'- uGCGGUGccgggaUCCCgaGGCGUCgCU-GCCGGCc -3'
miRNA:   3'- -UGCCGC------AGGGg-CCGCAG-GAgCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 75488 0.7 0.298862
Target:  5'- cGCGcGCGaCCaCCGGCGcgcgggaaagCCUCGCgGGCc -3'
miRNA:   3'- -UGC-CGCaGG-GGCCGCa---------GGAGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 132729 0.7 0.298862
Target:  5'- cGCGaGCuggCCCGGCGUggCCUCGgCGGCa -3'
miRNA:   3'- -UGC-CGcagGGGCCGCA--GGAGCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 150112 0.7 0.311945
Target:  5'- gGCGGCcccGUCCCCGGgGaCCaacCCGGCg -3'
miRNA:   3'- -UGCCG---CAGGGGCCgCaGGagcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 101021 0.7 0.311945
Target:  5'- aGCGGCGgCCCgCGGCGcUCgaaaaucgcagCGCUGGCg -3'
miRNA:   3'- -UGCCGCaGGG-GCCGCaGGa----------GCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.