miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 4917 1.1 0.000417
Target:  5'- gACGGCGUCCCCGGCGUCCUCGCCGGCg -3'
miRNA:   3'- -UGCCGCAGGGGCCGCAGGAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3480 0.83 0.038696
Target:  5'- cGCGGCG--CCCGGCGUCgUCGUCGGCg -3'
miRNA:   3'- -UGCCGCagGGGCCGCAGgAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 86002 0.76 0.12451
Target:  5'- gACGGCGUCuCCCGGgGgcgCUUgGCCGGg -3'
miRNA:   3'- -UGCCGCAG-GGGCCgCa--GGAgCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 52872 0.75 0.147295
Target:  5'- -aGGCGaCCgCCGGCGgcgacgugccccUCCUCGuCCGGCg -3'
miRNA:   3'- ugCCGCaGG-GGCCGC------------AGGAGC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3001 0.74 0.17382
Target:  5'- gGCGGCGgccgCCagcgcgucggCGGCGUCCggugCGCUGGCc -3'
miRNA:   3'- -UGCCGCa---GGg---------GCCGCAGGa---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 144834 0.74 0.17382
Target:  5'- cGCGGCGgUCCgGGCcccGUCCggacccgcUCGCCGGCa -3'
miRNA:   3'- -UGCCGCaGGGgCCG---CAGG--------AGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 4444 0.74 0.17794
Target:  5'- gGCGGCGUCCgcCCGGgGgcugCCggCGCCGcGCu -3'
miRNA:   3'- -UGCCGCAGG--GGCCgCa---GGa-GCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 56262 0.74 0.180875
Target:  5'- cCGGgcccCGUCCCCGGgGUCCUuccugugcaggcgaCGCCGGa -3'
miRNA:   3'- uGCC----GCAGGGGCCgCAGGA--------------GCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 3646 0.74 0.18644
Target:  5'- gGCGGCGaCCCCcuCGUCaucugCGCCGGCg -3'
miRNA:   3'- -UGCCGCaGGGGccGCAGga---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 1715 0.73 0.195297
Target:  5'- -aGGcCGcCgCCCGGcCGUCCagCGCCGGCa -3'
miRNA:   3'- ugCC-GCaG-GGGCC-GCAGGa-GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 56534 0.73 0.195297
Target:  5'- cCGGCGuUCCCCGGgcaUGUUCUCGCaccgucuugaCGGCa -3'
miRNA:   3'- uGCCGC-AGGGGCC---GCAGGAGCG----------GCCG- -5'
5976 5' -65.4 NC_001806.1 + 69422 0.73 0.199862
Target:  5'- -gGGCGUCCCCGcGCGgacgCC-CaCCGGCc -3'
miRNA:   3'- ugCCGCAGGGGC-CGCa---GGaGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 89257 0.73 0.199862
Target:  5'- -gGGgGUCCCCGGCuggcUCCgcgaggGCCGGCg -3'
miRNA:   3'- ugCCgCAGGGGCCGc---AGGag----CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 42763 0.73 0.214117
Target:  5'- aGCGGgGUCCCgugcgccagGGCGUCCUguaGCgCGGCg -3'
miRNA:   3'- -UGCCgCAGGGg--------CCGCAGGAg--CG-GCCG- -5'
5976 5' -65.4 NC_001806.1 + 77104 0.73 0.214117
Target:  5'- -gGGCGUCCUgGGCG-CCaagagCGCCGaGCg -3'
miRNA:   3'- ugCCGCAGGGgCCGCaGGa----GCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 2299 0.73 0.216082
Target:  5'- cCGGCGgccCCCCcgaGGCcccgccgccggccagGUCCUCGCCcGGCa -3'
miRNA:   3'- uGCCGCa--GGGG---CCG---------------CAGGAGCGG-CCG- -5'
5976 5' -65.4 NC_001806.1 + 143386 0.72 0.218561
Target:  5'- gACGGCGacaacgcUCCCCGGCGgCCgggUCG-CGGCu -3'
miRNA:   3'- -UGCCGC-------AGGGGCCGCaGG---AGCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 104433 0.72 0.219059
Target:  5'- uACGGCGUU----GCGcCCUCGCCGGCa -3'
miRNA:   3'- -UGCCGCAGgggcCGCaGGAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3178 0.72 0.224099
Target:  5'- cACGGCGgCCaCGGCGgCCUCgcugccGCCGGCc -3'
miRNA:   3'- -UGCCGCaGGgGCCGCaGGAG------CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 44611 0.72 0.224099
Target:  5'- ---cCGUCUgaaCCGGCGUCagCUCGCCGGCa -3'
miRNA:   3'- ugccGCAGG---GGCCGCAG--GAGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.