miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 638 0.66 0.510041
Target:  5'- cCGGCcccagcccUCCCCGGCcccaGcCCUCcCCGGCc -3'
miRNA:   3'- uGCCGc-------AGGGGCCG----CaGGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 702 0.68 0.43185
Target:  5'- cCGGCcccagcccUCCCCGGCcccaGcCCUCcCCGGCg -3'
miRNA:   3'- uGCCGc-------AGGGGCCG----CaGGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 1448 0.72 0.229236
Target:  5'- cCGGCGgcagggcCCCCGGgccguCGUCgUCGCCGcGCa -3'
miRNA:   3'- uGCCGCa------GGGGCC-----GCAGgAGCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 1715 0.73 0.195297
Target:  5'- -aGGcCGcCgCCCGGcCGUCCagCGCCGGCa -3'
miRNA:   3'- ugCC-GCaG-GGGCC-GCAGGa-GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 2299 0.73 0.216082
Target:  5'- cCGGCGgccCCCCcgaGGCcccgccgccggccagGUCCUCGCCcGGCa -3'
miRNA:   3'- uGCCGCa--GGGG---CCG---------------CAGGAGCGG-CCG- -5'
5976 5' -65.4 NC_001806.1 + 2451 0.67 0.474478
Target:  5'- -aGGCGgcCCCCGGCGgCCcCGUgGGg -3'
miRNA:   3'- ugCCGCa-GGGGCCGCaGGaGCGgCCg -5'
5976 5' -65.4 NC_001806.1 + 2519 0.67 0.474478
Target:  5'- gGCGGCGggggcgggCCCGGCG-CaC-CGCgCGGCg -3'
miRNA:   3'- -UGCCGCag------GGGCCGCaG-GaGCG-GCCG- -5'
5976 5' -65.4 NC_001806.1 + 2875 0.68 0.43185
Target:  5'- -gGGCGUCCgagCCgggGGCGUCCgCGCC-GCu -3'
miRNA:   3'- ugCCGCAGG---GG---CCGCAGGaGCGGcCG- -5'
5976 5' -65.4 NC_001806.1 + 3001 0.74 0.17382
Target:  5'- gGCGGCGgccgCCagcgcgucggCGGCGUCCggugCGCUGGCc -3'
miRNA:   3'- -UGCCGCa---GGg---------GCCGCAGGa---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3139 0.66 0.510041
Target:  5'- cGCGGgGcccagggCCCCGGCGaCCagGCucaCGGCg -3'
miRNA:   3'- -UGCCgCa------GGGGCCGCaGGagCG---GCCG- -5'
5976 5' -65.4 NC_001806.1 + 3178 0.72 0.224099
Target:  5'- cACGGCGgCCaCGGCGgCCUCgcugccGCCGGCc -3'
miRNA:   3'- -UGCCGCaGGgGCCGCaGGAG------CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3480 0.83 0.038696
Target:  5'- cGCGGCG--CCCGGCGUCgUCGUCGGCg -3'
miRNA:   3'- -UGCCGCagGGGCCGCAGgAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3592 0.7 0.325458
Target:  5'- cGCGGCGccguaCCCGGCGggcaccgcgCgCUCGcCCGGUg -3'
miRNA:   3'- -UGCCGCag---GGGCCGCa--------G-GAGC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 3646 0.74 0.18644
Target:  5'- gGCGGCGaCCCCcuCGUCaucugCGCCGGCg -3'
miRNA:   3'- -UGCCGCaGGGGccGCAGga---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 4044 0.69 0.346534
Target:  5'- cGCGGCGUCgCCCagcucgGGCGcCCacacggcCGCCGGg -3'
miRNA:   3'- -UGCCGCAG-GGG------CCGCaGGa------GCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 4307 0.66 0.492111
Target:  5'- aGCGGC--CCgUGGCGUCgCg-GCCGGCc -3'
miRNA:   3'- -UGCCGcaGGgGCCGCAG-GagCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 4368 0.67 0.483256
Target:  5'- cGCGGaggCCgCgGGgGUCCUCGCCGccGCc -3'
miRNA:   3'- -UGCCgcaGG-GgCCgCAGGAGCGGC--CG- -5'
5976 5' -65.4 NC_001806.1 + 4444 0.74 0.17794
Target:  5'- gGCGGCGUCCgcCCGGgGgcugCCggCGCCGcGCu -3'
miRNA:   3'- -UGCCGCAGG--GGCCgCa---GGa-GCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 4646 0.68 0.423595
Target:  5'- gACGaCGUCuCCgCGGCGgCUggGCCGGCg -3'
miRNA:   3'- -UGCcGCAG-GG-GCCGCaGGagCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 4678 0.66 0.537428
Target:  5'- cGCGGCGacaggcggUCCgUGGgGUCCggauacgCGCCGcGUa -3'
miRNA:   3'- -UGCCGC--------AGGgGCCgCAGGa------GCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.