miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 4736 0.68 0.391545
Target:  5'- cGCGGC--CCCgGGcCGgggCCcggUCGCCGGCg -3'
miRNA:   3'- -UGCCGcaGGGgCC-GCa--GG---AGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 4917 1.1 0.000417
Target:  5'- gACGGCGUCCCCGGCGUCCUCGCCGGCg -3'
miRNA:   3'- -UGCCGCAGGGGCCGCAGGAGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 5388 0.7 0.325458
Target:  5'- gACGGUcuGUCUCUGGCgGUCCcgCGUCGGg -3'
miRNA:   3'- -UGCCG--CAGGGGCCG-CAGGa-GCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 5461 0.71 0.286209
Target:  5'- -gGGCGUCCUCGGgcucauauaGUCCcagggGCCGGCg -3'
miRNA:   3'- ugCCGCAGGGGCCg--------CAGGag---CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 5837 0.68 0.43185
Target:  5'- uUGGcCGUCCCCGGgccccccgGUCCcgccCGCCGGa -3'
miRNA:   3'- uGCC-GCAGGGGCCg-------CAGGa---GCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 6081 0.66 0.544818
Target:  5'- -gGGCGggCCCgGGCGgcggggggcgggUCUCuCCGGCg -3'
miRNA:   3'- ugCCGCa-GGGgCCGCa-----------GGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 9276 0.71 0.286209
Target:  5'- cGCGauuagcuCGUCUCCGaCGUCCaccUCGCCGGCg -3'
miRNA:   3'- -UGCc------GCAGGGGCcGCAGG---AGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 10416 0.67 0.46578
Target:  5'- -gGGgGUCCCgcUGGCGggagUGCCGGCg -3'
miRNA:   3'- ugCCgCAGGG--GCCGCaggaGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 12842 0.66 0.492111
Target:  5'- -aGGCGUCg-CGGCGUCCUgGaucgaCGGUa -3'
miRNA:   3'- ugCCGCAGggGCCGCAGGAgCg----GCCG- -5'
5976 5' -65.4 NC_001806.1 + 16710 0.7 0.318648
Target:  5'- cACGuCGUCCggGGCGUCCUCGUcgacaucguccgCGGCa -3'
miRNA:   3'- -UGCcGCAGGggCCGCAGGAGCG------------GCCG- -5'
5976 5' -65.4 NC_001806.1 + 17449 0.67 0.440198
Target:  5'- cUGG-GUaCCCCGGuCGUCgUUCGuCCGGCc -3'
miRNA:   3'- uGCCgCA-GGGGCC-GCAG-GAGC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 20292 0.71 0.286209
Target:  5'- cCGGCGgCCCCgcccccuuggGGCgGUCCcgccCGCCGGCc -3'
miRNA:   3'- uGCCGCaGGGG----------CCG-CAGGa---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 20370 0.66 0.492111
Target:  5'- cCGcCGUCCCguugguccCGGCGUCCg-GCgGGCg -3'
miRNA:   3'- uGCcGCAGGG--------GCCGCAGGagCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 20651 0.71 0.256429
Target:  5'- cGCGGCcacggGcCCCCGGCGUgCCggCGUCGGg -3'
miRNA:   3'- -UGCCG-----CaGGGGCCGCA-GGa-GCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 21286 0.69 0.373089
Target:  5'- cCGGCGggacgggagggccCCCgCGGCGggcaCCgaCGCCGGCg -3'
miRNA:   3'- uGCCGCa------------GGG-GCCGCa---GGa-GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 21628 0.68 0.43185
Target:  5'- gUGGCGgCCaUCGGCGUcaucgaCCUCGUCGGa -3'
miRNA:   3'- uGCCGCaGG-GGCCGCA------GGAGCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 21774 0.69 0.346534
Target:  5'- gGCGGgGUCCgUCGaGCG-CggCGCCGGCa -3'
miRNA:   3'- -UGCCgCAGG-GGC-CGCaGgaGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 21871 0.69 0.353772
Target:  5'- gGCGGCGaggaCCCCcGCGgCCUCcGCgGGCc -3'
miRNA:   3'- -UGCCGCa---GGGGcCGCaGGAG-CGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 22176 0.71 0.262175
Target:  5'- -gGGCG-CCCCGGCGgCCgUGUgGGCg -3'
miRNA:   3'- ugCCGCaGGGGCCGCaGGaGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 22663 0.72 0.228718
Target:  5'- uACGGCG-CCgCGGgGaUCCUCGCCgcccuggGGCg -3'
miRNA:   3'- -UGCCGCaGGgGCCgC-AGGAGCGG-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.