miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 151305 0.7 0.332376
Target:  5'- gGCGGUGggCCgGGCcUCUggCGCCGGCu -3'
miRNA:   3'- -UGCCGCagGGgCCGcAGGa-GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 151116 0.66 0.510041
Target:  5'- cGCGGgGggCUCCGGCGcccccUCCcCGCCcGCg -3'
miRNA:   3'- -UGCCgCa-GGGGCCGC-----AGGaGCGGcCG- -5'
5976 5' -65.4 NC_001806.1 + 150112 0.7 0.311945
Target:  5'- gGCGGCcccGUCCCCGGgGaCCaacCCGGCg -3'
miRNA:   3'- -UGCCG---CAGGGGCCgCaGGagcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 149775 0.68 0.418688
Target:  5'- cAUGGCGcccggCCCCucaccucgcgcugggGGCGgcCCUCagGCCGGCg -3'
miRNA:   3'- -UGCCGCa----GGGG---------------CCGCa-GGAG--CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 149257 0.71 0.256429
Target:  5'- -gGGgGUCCCaCGGCGUCCcccaaauaUgGCgGGCg -3'
miRNA:   3'- ugCCgCAGGG-GCCGCAGG--------AgCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 148513 0.68 0.399409
Target:  5'- gACGGCcUCCUCGGCcUCCaUGCgGGUc -3'
miRNA:   3'- -UGCCGcAGGGGCCGcAGGaGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 147301 0.66 0.537428
Target:  5'- -gGGgGUCCCgGGCccacCCUgGCCGcGCc -3'
miRNA:   3'- ugCCgCAGGGgCCGca--GGAgCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 145169 0.67 0.457166
Target:  5'- -gGGCG-CCCCGGUGUCgUucaacaaagaCGCCGcGUu -3'
miRNA:   3'- ugCCGCaGGGGCCGCAGgA----------GCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 144834 0.74 0.17382
Target:  5'- cGCGGCGgUCCgGGCcccGUCCggacccgcUCGCCGGCa -3'
miRNA:   3'- -UGCCGCaGGGgCCG---CAGG--------AGCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 144138 0.66 0.492111
Target:  5'- cCGGCc-CCCCGcGaGUCCaccCGCCGGCc -3'
miRNA:   3'- uGCCGcaGGGGC-CgCAGGa--GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 143386 0.72 0.218561
Target:  5'- gACGGCGacaacgcUCCCCGGCGgCCgggUCG-CGGCu -3'
miRNA:   3'- -UGCCGC-------AGGGGCCGCaGG---AGCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 142151 0.68 0.407373
Target:  5'- gGCGGCGUCCCgucgcggggUGGgGUCCgaCG-UGGCg -3'
miRNA:   3'- -UGCCGCAGGG---------GCCgCAGGa-GCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 140027 0.66 0.510041
Target:  5'- cGCGGCGaaagcgCCCgGaGCG-CCacgGCCGGCa -3'
miRNA:   3'- -UGCCGCa-----GGGgC-CGCaGGag-CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 136635 0.68 0.399409
Target:  5'- uCGGCcaCCCCGGCGauauccgCCUC-CCGGg -3'
miRNA:   3'- uGCCGcaGGGGCCGCa------GGAGcGGCCg -5'
5976 5' -65.4 NC_001806.1 + 134981 0.67 0.486789
Target:  5'- cGCGGCGgccaUCCCGGUGcccgaugcccccgcCCUgGuCCGGCg -3'
miRNA:   3'- -UGCCGCa---GGGGCCGCa-------------GGAgC-GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 134837 0.66 0.519108
Target:  5'- cUGGCGgucgccgaCCUGGCGcaCCUCGCaGGCc -3'
miRNA:   3'- uGCCGCag------GGGCCGCa-GGAGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 134746 0.66 0.546671
Target:  5'- -aGGCGUCCUCGGgacuccCGUCCagaaCGaaccgcaaCCGGCa -3'
miRNA:   3'- ugCCGCAGGGGCC------GCAGGa---GC--------GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 132904 0.67 0.483256
Target:  5'- cUGGCGgCCCUGGcCGaCCUCggggggagcggGCUGGCg -3'
miRNA:   3'- uGCCGCaGGGGCC-GCaGGAG-----------CGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 132729 0.7 0.298862
Target:  5'- cGCGaGCuggCCCGGCGUggCCUCGgCGGCa -3'
miRNA:   3'- -UGC-CGcagGGGCCGCA--GGAGCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 130464 0.7 0.298862
Target:  5'- uGCGGUGccgggaUCCCgaGGCGUCgCU-GCCGGCc -3'
miRNA:   3'- -UGCCGC------AGGGg-CCGCAG-GAgCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.