miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 51276 0.66 0.69546
Target:  5'- cGGcGCGAGcuCCCugcggcuggcGCGGugCCUGACGcCu -3'
miRNA:   3'- -CC-CGCUCu-GGG----------UGCCugGGGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 72343 0.66 0.69546
Target:  5'- uGGGCGGGAgCCAUGGugUuuuucgugCCGuCGGg -3'
miRNA:   3'- -CCCGCUCUgGGUGCCugG--------GGCuGCUg -5'
5977 5' -61.3 NC_001806.1 + 20714 0.66 0.69546
Target:  5'- gGGGUG-GGCCCGCcggggGGGCggggggCCGGCGGCc -3'
miRNA:   3'- -CCCGCuCUGGGUG-----CCUGg-----GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 74768 0.66 0.69546
Target:  5'- cGGGCGAagguGGCCCGCG-ACgCCCGGgaGAa -3'
miRNA:   3'- -CCCGCU----CUGGGUGCcUG-GGGCUg-CUg -5'
5977 5' -61.3 NC_001806.1 + 23854 0.66 0.694502
Target:  5'- uGGCGgccuggaugcgccAGAUCC-CcGACCCCGAgGACg -3'
miRNA:   3'- cCCGC-------------UCUGGGuGcCUGGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 86033 0.66 0.692586
Target:  5'- aGGGC-AGGgCCGCGGGgggggcgggcucguCCCCuggGGCGGCg -3'
miRNA:   3'- -CCCGcUCUgGGUGCCU--------------GGGG---CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 4316 0.67 0.685865
Target:  5'- uGGCGucgcGGCCggccaccgccgCGCGGG-CCCGGCGGCg -3'
miRNA:   3'- cCCGCu---CUGG-----------GUGCCUgGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 131498 0.67 0.685865
Target:  5'- gGGGCcaaguuGGCCCcCGGACCCgGGCc-- -3'
miRNA:   3'- -CCCGcu----CUGGGuGCCUGGGgCUGcug -5'
5977 5' -61.3 NC_001806.1 + 134902 0.67 0.685865
Target:  5'- cGGCcgccucGACCaggcuGCGGuCCCCGGCGAUg -3'
miRNA:   3'- cCCGcu----CUGGg----UGCCuGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 144792 0.67 0.685865
Target:  5'- gGGGCGAaggccgcguacGGCCCG-GGAcgaggggcCCCCGACcGCg -3'
miRNA:   3'- -CCCGCU-----------CUGGGUgCCU--------GGGGCUGcUG- -5'
5977 5' -61.3 NC_001806.1 + 99439 0.67 0.685865
Target:  5'- gGGGCGA-AUCaGCGGGCCCCcaucaucugagaGACGAa -3'
miRNA:   3'- -CCCGCUcUGGgUGCCUGGGG------------CUGCUg -5'
5977 5' -61.3 NC_001806.1 + 21509 0.67 0.684903
Target:  5'- cGGGCcccGGCCCGgGGccgcgaacgggagGCCCCGcuacGCGGCg -3'
miRNA:   3'- -CCCGcu-CUGGGUgCC-------------UGGGGC----UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 134471 0.67 0.680088
Target:  5'- -uGCGGcGACCCGC-GACCCCGAgccacgccagaaccuUGGCa -3'
miRNA:   3'- ccCGCU-CUGGGUGcCUGGGGCU---------------GCUG- -5'
5977 5' -61.3 NC_001806.1 + 27689 0.67 0.676229
Target:  5'- aGGCGGGaaGCCC-CGGGgCaCCGACG-Ca -3'
miRNA:   3'- cCCGCUC--UGGGuGCCUgG-GGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 32962 0.67 0.676229
Target:  5'- cGGGcCGGGGCCCcuuggguccGCcgGGGCCCCGGgcCGGg -3'
miRNA:   3'- -CCC-GCUCUGGG---------UG--CCUGGGGCU--GCUg -5'
5977 5' -61.3 NC_001806.1 + 23923 0.67 0.676229
Target:  5'- cGGGCGAgGACCUggccggcgGCGGGgCCUGGgGGg -3'
miRNA:   3'- -CCCGCU-CUGGG--------UGCCUgGGGCUgCUg -5'
5977 5' -61.3 NC_001806.1 + 133411 0.67 0.676229
Target:  5'- -cGCG-GGCCCGCGuACaCCaCGGCGGCa -3'
miRNA:   3'- ccCGCuCUGGGUGCcUG-GG-GCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 102080 0.67 0.666561
Target:  5'- cGGGCGAuGGCCUccgaagggACGG-CUCCGGgGAUc -3'
miRNA:   3'- -CCCGCU-CUGGG--------UGCCuGGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 69685 0.67 0.666561
Target:  5'- uGGCGAG-CCUgcgGCGGGCgCUCGugGGg -3'
miRNA:   3'- cCCGCUCuGGG---UGCCUG-GGGCugCUg -5'
5977 5' -61.3 NC_001806.1 + 4833 0.67 0.666561
Target:  5'- cGGCGAGG-CCGCGGGgUCgGGCGuCg -3'
miRNA:   3'- cCCGCUCUgGGUGCCUgGGgCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.