miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 7704 0.66 0.733285
Target:  5'- uGGUGAuguuGCCCGCGGACCaCCGGg--- -3'
miRNA:   3'- cCCGCUc---UGGGUGCCUGG-GGCUgcug -5'
5977 5' -61.3 NC_001806.1 + 21979 0.66 0.733285
Target:  5'- cGGGuCGAGcuggacGCCgACGcGACCuCCGGCGcCu -3'
miRNA:   3'- -CCC-GCUC------UGGgUGC-CUGG-GGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 109154 0.66 0.733285
Target:  5'- cGGGUGAGGCCagagucggCGCGGggcuccuccaGCgCCCGgucuGCGGCa -3'
miRNA:   3'- -CCCGCUCUGG--------GUGCC----------UG-GGGC----UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 113882 0.66 0.732352
Target:  5'- cGGGUuagcgcgGGGGgCCAC-GACCCCGuguacGCGGCg -3'
miRNA:   3'- -CCCG-------CUCUgGGUGcCUGGGGC-----UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 76826 0.66 0.723928
Target:  5'- cGGCGAcGGCCC--GGGCCUCcuacGCGACa -3'
miRNA:   3'- cCCGCU-CUGGGugCCUGGGGc---UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 47841 0.66 0.723928
Target:  5'- -cGCGAGAuCCUAUGGGCCgCGuACGcCg -3'
miRNA:   3'- ccCGCUCU-GGGUGCCUGGgGC-UGCuG- -5'
5977 5' -61.3 NC_001806.1 + 6724 0.66 0.723928
Target:  5'- cGGGUuGGGCCCA-GGACguacgCCGACGuACg -3'
miRNA:   3'- -CCCGcUCUGGGUgCCUGg----GGCUGC-UG- -5'
5977 5' -61.3 NC_001806.1 + 49458 0.66 0.723928
Target:  5'- aGGgGGGAUaCCugGG-UCCCGuCGACg -3'
miRNA:   3'- cCCgCUCUG-GGugCCuGGGGCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 30434 0.66 0.723928
Target:  5'- aGGGUGGG---CACGGGCCCUcccGCGGCg -3'
miRNA:   3'- -CCCGCUCuggGUGCCUGGGGc--UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 21423 0.66 0.722988
Target:  5'- cGGCcucgccGCCC-CGGACCCCcgccuuucgagccGACGACg -3'
miRNA:   3'- cCCGcuc---UGGGuGCCUGGGG-------------CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 35093 0.66 0.718279
Target:  5'- uGGGaauGACCCcCGGGguuauaaaaggcgcgUCCCGugGACg -3'
miRNA:   3'- -CCCgcuCUGGGuGCCU---------------GGGGCugCUG- -5'
5977 5' -61.3 NC_001806.1 + 144836 0.66 0.714499
Target:  5'- cGGCGguccGGGCCCcgucCGGACCCgcuCGcCGGCa -3'
miRNA:   3'- cCCGC----UCUGGGu---GCCUGGG---GCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 151564 0.66 0.714499
Target:  5'- cGGCGGGGgCCGCGauGGCggCGGCGGCg -3'
miRNA:   3'- cCCGCUCUgGGUGC--CUGggGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 106574 0.66 0.714499
Target:  5'- cGGGCGGGaAUUCAUGGGgCUCGugauauccaugcACGACa -3'
miRNA:   3'- -CCCGCUC-UGGGUGCCUgGGGC------------UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 34801 0.66 0.708811
Target:  5'- gGGGCGGGaaaccaaguaggcccGCCCAucCGcGGCCCCuccCGGCa -3'
miRNA:   3'- -CCCGCUC---------------UGGGU--GC-CUGGGGcu-GCUG- -5'
5977 5' -61.3 NC_001806.1 + 26495 0.66 0.705007
Target:  5'- aGGaGCGc-GCCCGCGGccGCCCCGcCGcCg -3'
miRNA:   3'- -CC-CGCucUGGGUGCC--UGGGGCuGCuG- -5'
5977 5' -61.3 NC_001806.1 + 39369 0.66 0.705007
Target:  5'- -aGCGuAGcaucaacucgcaGCCUACGauGACCCCGAUGGCg -3'
miRNA:   3'- ccCGC-UC------------UGGGUGC--CUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 43816 0.66 0.705007
Target:  5'- cGGCGAcGCCCuccCGGACCCCaaacCGGa -3'
miRNA:   3'- cCCGCUcUGGGu--GCCUGGGGcu--GCUg -5'
5977 5' -61.3 NC_001806.1 + 75506 0.66 0.705007
Target:  5'- -cGCGGGAaagcCUCGCGGGCCaCGAgGGCa -3'
miRNA:   3'- ccCGCUCU----GGGUGCCUGGgGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 20714 0.66 0.69546
Target:  5'- gGGGUG-GGCCCGCcggggGGGCggggggCCGGCGGCc -3'
miRNA:   3'- -CCCGCuCUGGGUG-----CCUGg-----GGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.