miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 2098 0.75 0.26563
Target:  5'- uGGCGAGcagccccagaaACuCCACGG-CCCCGGCGAa -3'
miRNA:   3'- cCCGCUC-----------UG-GGUGCCuGGGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 138849 0.75 0.271679
Target:  5'- cGGGaCGGGGgCC-CGGACgauuuuCCCGACGACg -3'
miRNA:   3'- -CCC-GCUCUgGGuGCCUG------GGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 132925 0.75 0.271679
Target:  5'- gGGGgGAGcggGCUgGCGGACCCCcACGGCc -3'
miRNA:   3'- -CCCgCUC---UGGgUGCCUGGGGcUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 147686 0.74 0.277838
Target:  5'- gGGGcCGGGGCgCggggGCGGGCCCCGgagGCGGCg -3'
miRNA:   3'- -CCC-GCUCUGgG----UGCCUGGGGC---UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 106366 0.74 0.277838
Target:  5'- cGGuuGGGGCCCgGCGG-CaCCCGACGACg -3'
miRNA:   3'- -CCcgCUCUGGG-UGCCuG-GGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 92940 0.74 0.277838
Target:  5'- aGGcCGGGGCCCGCgcgcugauGGACgCCGugGACg -3'
miRNA:   3'- cCC-GCUCUGGGUG--------CCUGgGGCugCUG- -5'
5977 5' -61.3 NC_001806.1 + 22727 0.74 0.282216
Target:  5'- gGGGCGAcGACCCcgACGccgcccgccacgccGACgCCGACGACg -3'
miRNA:   3'- -CCCGCU-CUGGG--UGC--------------CUGgGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 105719 0.74 0.284109
Target:  5'- gGGGCGGcaaGCCCugccauagccACGGGCCCCGugGGu -3'
miRNA:   3'- -CCCGCUc--UGGG----------UGCCUGGGGCugCUg -5'
5977 5' -61.3 NC_001806.1 + 151530 0.74 0.284109
Target:  5'- uGGGaCGGcGCCCGUGGGCCCgGGCGGCc -3'
miRNA:   3'- -CCC-GCUcUGGGUGCCUGGGgCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 52859 0.74 0.296983
Target:  5'- -cGCGGGACCCGacaGGcgACCgCCGGCGGCg -3'
miRNA:   3'- ccCGCUCUGGGUg--CC--UGG-GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 3322 0.74 0.303589
Target:  5'- -aGCGGGGCCCGCGGGUCCCucCGGCc -3'
miRNA:   3'- ccCGCUCUGGGUGCCUGGGGcuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 73138 0.74 0.303589
Target:  5'- cGGGCGAGgacgacggGCCCACGG-UUCCGGCGuCc -3'
miRNA:   3'- -CCCGCUC--------UGGGUGCCuGGGGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 130860 0.73 0.317137
Target:  5'- uGGGa-GGACCUuCGG-CCCCGAUGACg -3'
miRNA:   3'- -CCCgcUCUGGGuGCCuGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 42836 0.73 0.317137
Target:  5'- uGGGuCGGGuucGCCCGCGGGCCUgGugGGu -3'
miRNA:   3'- -CCC-GCUC---UGGGUGCCUGGGgCugCUg -5'
5977 5' -61.3 NC_001806.1 + 3360 0.73 0.317137
Target:  5'- cGGGCcGGGCCC-CGGccaGCCCCggGACGGCc -3'
miRNA:   3'- -CCCGcUCUGGGuGCC---UGGGG--CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 30794 0.73 0.32408
Target:  5'- cGGGCGGGGCCguCGGuGCCCUGGgagggaGACa -3'
miRNA:   3'- -CCCGCUCUGGguGCC-UGGGGCUg-----CUG- -5'
5977 5' -61.3 NC_001806.1 + 101841 0.73 0.329007
Target:  5'- cGGUGAGGCgCaccagcgccgccugGCGGGcCCCCGAUGACa -3'
miRNA:   3'- cCCGCUCUGgG--------------UGCCU-GGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 106662 0.73 0.331135
Target:  5'- cGGGuCGGGGacCCCGCGGAcgaaaaccCCCCGGgGGCu -3'
miRNA:   3'- -CCC-GCUCU--GGGUGCCU--------GGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 142026 0.73 0.331135
Target:  5'- cGGCGAGgaGCgCCGCcGGCCCUGACGAg -3'
miRNA:   3'- cCCGCUC--UG-GGUGcCUGGGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 33367 0.73 0.338303
Target:  5'- gGGGCccgGAGAgCCGCGGcACCCgGACG-Cg -3'
miRNA:   3'- -CCCG---CUCUgGGUGCC-UGGGgCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.