miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 5239 1.09 0.001106
Target:  5'- gGGGCGAGACCCACGGACCCCGACGACc -3'
miRNA:   3'- -CCCGCUCUGGGUGCCUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 3139 0.86 0.049863
Target:  5'- -cGCGGGGCCCA-GGGCCCCGGCGACc -3'
miRNA:   3'- ccCGCUCUGGGUgCCUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 95298 0.86 0.051694
Target:  5'- gGGGCGGGgggcgcggcggacgcGCCCaagggcggcGCGGGCCCCGACGACg -3'
miRNA:   3'- -CCCGCUC---------------UGGG---------UGCCUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 20398 0.8 0.115194
Target:  5'- cGGGCGGGACCgGgGGGCCCgggGACGGCc -3'
miRNA:   3'- -CCCGCUCUGGgUgCCUGGGg--CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 5773 0.8 0.118091
Target:  5'- gGGGCGGGGCCC--GGGCCCCGACu-- -3'
miRNA:   3'- -CCCGCUCUGGGugCCUGGGGCUGcug -5'
5977 5' -61.3 NC_001806.1 + 46204 0.8 0.127191
Target:  5'- uGGCGAcuaaGGCCCcCGcGGCCCCGGCGGCg -3'
miRNA:   3'- cCCGCU----CUGGGuGC-CUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 22637 0.76 0.211022
Target:  5'- cGGGCGAG-CgCGCGGugCCCGccggguACGGCg -3'
miRNA:   3'- -CCCGCUCuGgGUGCCugGGGC------UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 144967 0.76 0.216016
Target:  5'- uGGCGGcccGGCCCG-GGGCCCCGGCGGa -3'
miRNA:   3'- cCCGCU---CUGGGUgCCUGGGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 23670 0.76 0.218042
Target:  5'- uGGCGAccggcccucauguuuGACCCGCGGGCCCUGGCc-- -3'
miRNA:   3'- cCCGCU---------------CUGGGUGCCUGGGGCUGcug -5'
5977 5' -61.3 NC_001806.1 + 24539 0.76 0.226307
Target:  5'- cGGGCGGcGGCCuCGgGGACCaCCGACGcCa -3'
miRNA:   3'- -CCCGCU-CUGG-GUgCCUGG-GGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 89582 0.76 0.226307
Target:  5'- cGGCcGGGCUUAUGGACCgCCGGCGGCc -3'
miRNA:   3'- cCCGcUCUGGGUGCCUGG-GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 80073 0.76 0.231073
Target:  5'- -cGCGGGAaucccucccuucaCCCugGGACCCCGcCGACc -3'
miRNA:   3'- ccCGCUCU-------------GGGugCCUGGGGCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 22918 0.76 0.237012
Target:  5'- cGGCcggaGGGACCCGCGGGCCCCGcuuccccgccGCGcCg -3'
miRNA:   3'- cCCG----CUCUGGGUGCCUGGGGC----------UGCuG- -5'
5977 5' -61.3 NC_001806.1 + 2811 0.75 0.242521
Target:  5'- uGGGCGGGGgCgGgcuCGGGCCCCGGgGGCg -3'
miRNA:   3'- -CCCGCUCUgGgU---GCCUGGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 22083 0.75 0.248137
Target:  5'- gGGGCGGGugCUguACGGcgGCCUgGGCGACa -3'
miRNA:   3'- -CCCGCUCugGG--UGCC--UGGGgCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 27082 0.75 0.248137
Target:  5'- cGGGCccuGGCCCGCGGAgccggCCCGGCGAa -3'
miRNA:   3'- -CCCGcu-CUGGGUGCCUg----GGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 49292 0.75 0.248137
Target:  5'- cGGGa-AGGCCCGC-GAgCCCGACGACg -3'
miRNA:   3'- -CCCgcUCUGGGUGcCUgGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 95407 0.75 0.251558
Target:  5'- gGGGCGAGGacgaagaccgucgCCGCGGGCCCgGGgGGCa -3'
miRNA:   3'- -CCCGCUCUg------------GGUGCCUGGGgCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 65635 0.75 0.25969
Target:  5'- uGGGCGAGAg----GGGCCCCGGCGGCc -3'
miRNA:   3'- -CCCGCUCUgggugCCUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 2098 0.75 0.26563
Target:  5'- uGGCGAGcagccccagaaACuCCACGG-CCCCGGCGAa -3'
miRNA:   3'- cCCGCUC-----------UG-GGUGCCuGGGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.