miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 1418 0.7 0.467611
Target:  5'- uGGcCGAGGCCCAgcgaauccCGGGCggcgCCGGCGGCa -3'
miRNA:   3'- cCC-GCUCUGGGU--------GCCUGg---GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 2008 0.68 0.598577
Target:  5'- aGGCGugcugccgcGACaCCGCGGGCCCguCGGCGGg -3'
miRNA:   3'- cCCGCu--------CUG-GGUGCCUGGG--GCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 2098 0.75 0.26563
Target:  5'- uGGCGAGcagccccagaaACuCCACGG-CCCCGGCGAa -3'
miRNA:   3'- cCCGCUC-----------UG-GGUGCCuGGGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 2423 0.72 0.382858
Target:  5'- cGGGCccgaggcgcgcagGGGGCCaaagagGCGGcCCCCGGCGGCc -3'
miRNA:   3'- -CCCG-------------CUCUGGg-----UGCCuGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 2526 0.67 0.666561
Target:  5'- gGGGCGGGcCCgGCGcACCgCgCGGCGAUc -3'
miRNA:   3'- -CCCGCUCuGGgUGCcUGG-G-GCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 2661 0.7 0.485526
Target:  5'- aGGGCGgcggccgcGGGCgCCGCcguguggcuGGGCCCCGGgGGCu -3'
miRNA:   3'- -CCCGC--------UCUG-GGUG---------CCUGGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 2726 0.71 0.450043
Target:  5'- gGGGuCGGGGCCCucgGCGGGCCggcGCGACa -3'
miRNA:   3'- -CCC-GCUCUGGG---UGCCUGGggcUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 2771 0.68 0.617987
Target:  5'- cGGGCG-GGCCUGC--GCCgCGGCGGCc -3'
miRNA:   3'- -CCCGCuCUGGGUGccUGGgGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 2811 0.75 0.242521
Target:  5'- uGGGCGGGGgCgGgcuCGGGCCCCGGgGGCg -3'
miRNA:   3'- -CCCGCUCUgGgU---GCCUGGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 3093 0.68 0.617987
Target:  5'- cGGCGGcGGCggCCGCGGAgCUCGGCaGGCg -3'
miRNA:   3'- cCCGCU-CUG--GGUGCCUgGGGCUG-CUG- -5'
5977 5' -61.3 NC_001806.1 + 3139 0.86 0.049863
Target:  5'- -cGCGGGGCCCA-GGGCCCCGGCGACc -3'
miRNA:   3'- ccCGCUCUGGGUgCCUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 3322 0.74 0.303589
Target:  5'- -aGCGGGGCCCGCGGGUCCCucCGGCc -3'
miRNA:   3'- ccCGCUCUGGGUGCCUGGGGcuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 3360 0.73 0.317137
Target:  5'- cGGGCcGGGCCC-CGGccaGCCCCggGACGGCc -3'
miRNA:   3'- -CCCGcUCUGGGuGCC---UGGGG--CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 3579 0.72 0.391585
Target:  5'- cGGCGAGGaucCCCGCGGcgccguaCCCGGCGGg -3'
miRNA:   3'- cCCGCUCU---GGGUGCCug-----GGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 4124 0.67 0.666561
Target:  5'- cGGGCGcccCCCAgaGGCCCgGGCGGCu -3'
miRNA:   3'- -CCCGCucuGGGUgcCUGGGgCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 4184 0.69 0.512989
Target:  5'- gGGGCgGGGGCCCggcgccgggccACGGcuCCCCGcUGACg -3'
miRNA:   3'- -CCCG-CUCUGGG-----------UGCCu-GGGGCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 4316 0.67 0.685865
Target:  5'- uGGCGucgcGGCCggccaccgccgCGCGGG-CCCGGCGGCg -3'
miRNA:   3'- cCCGCu---CUGG-----------GUGCCUgGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 4436 0.71 0.432844
Target:  5'- cGGGCGGGggcggcguccGCCCGgGGGCUgCCGGCGcCg -3'
miRNA:   3'- -CCCGCUC----------UGGGUgCCUGG-GGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 4659 0.69 0.550546
Target:  5'- cGGCGgcuGGGCCgGCGGGCg-CGGCGACa -3'
miRNA:   3'- cCCGC---UCUGGgUGCCUGggGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 4744 0.7 0.494605
Target:  5'- cGGGcCGGGGCCC--GGuCgCCGGCGGCg -3'
miRNA:   3'- -CCC-GCUCUGGGugCCuGgGGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.