miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 4833 0.67 0.666561
Target:  5'- cGGCGAGG-CCGCGGGgUCgGGCGuCg -3'
miRNA:   3'- cCCGCUCUgGGUGCCUgGGgCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 5092 0.69 0.531647
Target:  5'- uGGGCGGcGGCCCGucggUGGGgCCCGGgGAg -3'
miRNA:   3'- -CCCGCU-CUGGGU----GCCUgGGGCUgCUg -5'
5977 5' -61.3 NC_001806.1 + 5239 1.09 0.001106
Target:  5'- gGGGCGAGACCCACGGACCCCGACGACc -3'
miRNA:   3'- -CCCGCUCUGGGUGCCUGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 5675 0.7 0.494605
Target:  5'- aGGGCGGGugggUCCGCGccccGCCCCGcAUGGCa -3'
miRNA:   3'- -CCCGCUCu---GGGUGCc---UGGGGC-UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 5773 0.8 0.118091
Target:  5'- gGGGCGGGGCCC--GGGCCCCGACu-- -3'
miRNA:   3'- -CCCGCUCUGGGugCCUGGGGCUGcug -5'
5977 5' -61.3 NC_001806.1 + 6067 0.71 0.42439
Target:  5'- -cGCGccGGCCCcggggGCGGGCCCgGGCGGCg -3'
miRNA:   3'- ccCGCu-CUGGG-----UGCCUGGGgCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 6336 0.72 0.360478
Target:  5'- gGGGaCGcacCCCGgGGGCCuCCGACGACa -3'
miRNA:   3'- -CCC-GCucuGGGUgCCUGG-GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 6724 0.66 0.723928
Target:  5'- cGGGUuGGGCCCA-GGACguacgCCGACGuACg -3'
miRNA:   3'- -CCCGcUCUGGGUgCCUGg----GGCUGC-UG- -5'
5977 5' -61.3 NC_001806.1 + 7704 0.66 0.733285
Target:  5'- uGGUGAuguuGCCCGCGGACCaCCGGg--- -3'
miRNA:   3'- cCCGCUc---UGGGUGCCUGG-GGCUgcug -5'
5977 5' -61.3 NC_001806.1 + 10093 0.68 0.608274
Target:  5'- aGGCGAGACguCCACGuACUCgCGGCGcACg -3'
miRNA:   3'- cCCGCUCUG--GGUGCcUGGG-GCUGC-UG- -5'
5977 5' -61.3 NC_001806.1 + 11341 0.68 0.627709
Target:  5'- gGGGCGucGGAagcccagccgcCCCAgCGGGCUCCGAcucuuCGGCg -3'
miRNA:   3'- -CCCGC--UCU-----------GGGU-GCCUGGGGCU-----GCUG- -5'
5977 5' -61.3 NC_001806.1 + 12163 0.69 0.522286
Target:  5'- gGGGCGAcgugGGCaCGCGGucACCgUGACGACa -3'
miRNA:   3'- -CCCGCU----CUGgGUGCC--UGGgGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 16245 0.69 0.522286
Target:  5'- gGGGa-GGACCagaCACGuGACCCCggaGACGACa -3'
miRNA:   3'- -CCCgcUCUGG---GUGC-CUGGGG---CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 17048 0.66 0.742563
Target:  5'- --aCGAGcACCCcgaacgACGGGCCCCGggguuuuaaggaGCGGCa -3'
miRNA:   3'- cccGCUC-UGGG------UGCCUGGGGC------------UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 17788 0.66 0.733285
Target:  5'- uGGGUGGGAgaaCCGUGGGCCgUGcCGACu -3'
miRNA:   3'- -CCCGCUCUg--GGUGCCUGGgGCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 17840 0.68 0.627709
Target:  5'- uGGCGuGGACCC-CGuuCCCCG-CGGCc -3'
miRNA:   3'- cCCGC-UCUGGGuGCcuGGGGCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 18430 0.69 0.559118
Target:  5'- cGGCGcGACCCGCcccagaaucggauGGGCCCgGGCGu- -3'
miRNA:   3'- cCCGCuCUGGGUG-------------CCUGGGgCUGCug -5'
5977 5' -61.3 NC_001806.1 + 20398 0.8 0.115194
Target:  5'- cGGGCGGGACCgGgGGGCCCgggGACGGCc -3'
miRNA:   3'- -CCCGCUCUGGgUgCCUGGGg--CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 20570 0.68 0.579257
Target:  5'- gGGGCGcGGACCCAcccgcccuCGcGCCCCGcccAUGGCa -3'
miRNA:   3'- -CCCGC-UCUGGGU--------GCcUGGGGC---UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 20621 0.71 0.446573
Target:  5'- uGGGCGGGGCCggggguucgaccaACGGGCCgCGGCcACg -3'
miRNA:   3'- -CCCGCUCUGGg------------UGCCUGGgGCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.