miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 151564 0.66 0.714499
Target:  5'- cGGCGGGGgCCGCGauGGCggCGGCGGCg -3'
miRNA:   3'- cCCGCUCUgGGUGC--CUGggGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 151530 0.74 0.284109
Target:  5'- uGGGaCGGcGCCCGUGGGCCCgGGCGGCc -3'
miRNA:   3'- -CCC-GCUcUGGGUGCCUGGGgCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 151455 0.69 0.560073
Target:  5'- cGGCGGGGCggCCGCGGGCgcgcuCCUGACcGCg -3'
miRNA:   3'- cCCGCUCUG--GGUGCCUG-----GGGCUGcUG- -5'
5977 5' -61.3 NC_001806.1 + 151236 0.66 0.739788
Target:  5'- gGGGUGGGAggggucagccccgcCCCcCGGGCCCaCGcCGGg -3'
miRNA:   3'- -CCCGCUCU--------------GGGuGCCUGGG-GCuGCUg -5'
5977 5' -61.3 NC_001806.1 + 150892 0.68 0.588903
Target:  5'- cGGGCacGGGCCU-CGGGCCCCaggcACGGCc -3'
miRNA:   3'- -CCCGc-UCUGGGuGCCUGGGGc---UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 150666 0.66 0.742563
Target:  5'- uGGCcGGGCCCcgccgcgcugGCGG-CCgCCGAUGGCc -3'
miRNA:   3'- cCCGcUCUGGG----------UGCCuGG-GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 150611 0.71 0.42439
Target:  5'- uGGGCGGuaacucccGCCCAaugggcCGGGCCCCGAaGACu -3'
miRNA:   3'- -CCCGCUc-------UGGGU------GCCUGGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 150095 0.66 0.742563
Target:  5'- aGGC-AGGCCCaccGCGGGgcggccccguCCCCGGgGACc -3'
miRNA:   3'- cCCGcUCUGGG---UGCCU----------GGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 149837 0.68 0.608274
Target:  5'- gGGGCGGGGCuCCAUGGGggUCGuauGCGGCu -3'
miRNA:   3'- -CCCGCUCUG-GGUGCCUggGGC---UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 147733 0.69 0.550546
Target:  5'- gGGGCcacggccgcgcgGGGGCgCGCGGGUCCCGACG-Cg -3'
miRNA:   3'- -CCCG------------CUCUGgGUGCCUGGGGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 147686 0.74 0.277838
Target:  5'- gGGGcCGGGGCgCggggGCGGGCCCCGgagGCGGCg -3'
miRNA:   3'- -CCC-GCUCUGgG----UGCCUGGGGC---UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 147195 0.68 0.598577
Target:  5'- cGGagGAGGa-CGCGG-CCCCGGCGGCg -3'
miRNA:   3'- cCCg-CUCUggGUGCCuGGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 145000 0.68 0.617987
Target:  5'- gGGGCcccGGCCCG-GGGCCCCacaACGGCc -3'
miRNA:   3'- -CCCGcu-CUGGGUgCCUGGGGc--UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 144967 0.76 0.216016
Target:  5'- uGGCGGcccGGCCCG-GGGCCCCGGCGGa -3'
miRNA:   3'- cCCGCU---CUGGGUgCCUGGGGCUGCUg -5'
5977 5' -61.3 NC_001806.1 + 144836 0.66 0.714499
Target:  5'- cGGCGguccGGGCCCcgucCGGACCCgcuCGcCGGCa -3'
miRNA:   3'- cCCGC----UCUGGGu---GCCUGGG---GCuGCUG- -5'
5977 5' -61.3 NC_001806.1 + 144792 0.67 0.685865
Target:  5'- gGGGCGAaggccgcguacGGCCCG-GGAcgaggggcCCCCGACcGCg -3'
miRNA:   3'- -CCCGCU-----------CUGGGUgCCU--------GGGGCUGcUG- -5'
5977 5' -61.3 NC_001806.1 + 144575 0.67 0.637435
Target:  5'- cGGGCGcguccgGGugCCGCGGcucuccggGCCCCccugcagccggGGCGGCc -3'
miRNA:   3'- -CCCGC------UCugGGUGCC--------UGGGG-----------CUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 143979 0.69 0.541069
Target:  5'- cGGCGAcccccGGCCCGCacGAUCCCGACaACa -3'
miRNA:   3'- cCCGCU-----CUGGGUGc-CUGGGGCUGcUG- -5'
5977 5' -61.3 NC_001806.1 + 143372 0.72 0.383646
Target:  5'- gGGGCcggcAGACCgACGGcgacaacgcuCCCCGGCGGCc -3'
miRNA:   3'- -CCCGc---UCUGGgUGCCu---------GGGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 142026 0.73 0.331135
Target:  5'- cGGCGAGgaGCgCCGCcGGCCCUGACGAg -3'
miRNA:   3'- cCCGCUC--UG-GGUGcCUGGGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.