miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5978 3' -50.6 NC_001806.1 + 5295 1.12 0.006533
Target:  5'- cCGGUCGAUGCUUGGGUGGGAAAAAGGa -3'
miRNA:   3'- -GCCAGCUACGAACCCACCCUUUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 11761 0.87 0.231171
Target:  5'- uGGUCGAUGCUUGGGgagcGGGGAugguggucGAGGGa -3'
miRNA:   3'- gCCAGCUACGAACCCa---CCCUU--------UUUCC- -5'
5978 3' -50.6 NC_001806.1 + 32023 0.77 0.656453
Target:  5'- gGGUgGG-GCggagGGGUGGGggGGGGGg -3'
miRNA:   3'- gCCAgCUaCGaa--CCCACCCuuUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 30804 0.73 0.841225
Target:  5'- -cGUCGGUGCccUGGGaGGGAGAcaaGAGGa -3'
miRNA:   3'- gcCAGCUACGa-ACCCaCCCUUU---UUCC- -5'
5978 3' -50.6 NC_001806.1 + 110704 0.72 0.88037
Target:  5'- uGGUCGAcgagGCcgccuucgGGG-GGGAGGAGGGa -3'
miRNA:   3'- gCCAGCUa---CGaa------CCCaCCCUUUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 69498 0.72 0.88037
Target:  5'- gGGUCGAacgUGUUUGGGUuggcgcGGGAAuacGGGu -3'
miRNA:   3'- gCCAGCU---ACGAACCCA------CCCUUuu-UCC- -5'
5978 3' -50.6 NC_001806.1 + 145518 0.7 0.940801
Target:  5'- uGGcucUCuAUGCUUGGGUcuuacugccuGGGggGGGGGa -3'
miRNA:   3'- gCC---AGcUACGAACCCA----------CCCuuUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 34772 0.7 0.940801
Target:  5'- cCGG-CGggGCgguucgGGGgggGGGggGGGGGg -3'
miRNA:   3'- -GCCaGCuaCGaa----CCCa--CCCuuUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 81649 0.7 0.949881
Target:  5'- uCGGUCGGgaggGCUgu-GUGGGgcGAAGGc -3'
miRNA:   3'- -GCCAGCUa---CGAaccCACCCuuUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 103422 0.7 0.957983
Target:  5'- gGGgacaaGAUGgg-GGGUGGGAuGAGGGg -3'
miRNA:   3'- gCCag---CUACgaaCCCACCCUuUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 34046 0.7 0.957983
Target:  5'- -aGUgGggGCguggggUGGGUGGGAGAAGGc -3'
miRNA:   3'- gcCAgCuaCGa-----ACCCACCCUUUUUCc -5'
5978 3' -50.6 NC_001806.1 + 6422 0.69 0.968376
Target:  5'- gGGggGAcGCggGGGUGGaGGAGGGGGg -3'
miRNA:   3'- gCCagCUaCGaaCCCACC-CUUUUUCC- -5'
5978 3' -50.6 NC_001806.1 + 93708 0.68 0.976796
Target:  5'- gGGUUGGg----GGGUGGGGGAAccuAGGg -3'
miRNA:   3'- gCCAGCUacgaaCCCACCCUUUU---UCC- -5'
5978 3' -50.6 NC_001806.1 + 110115 0.68 0.979198
Target:  5'- aCGGUgGAUGUg-GGcGUGGGuauGGGGGa -3'
miRNA:   3'- -GCCAgCUACGaaCC-CACCCuu-UUUCC- -5'
5978 3' -50.6 NC_001806.1 + 122004 0.68 0.979198
Target:  5'- uGGUUGuGUGUguaugUGGGUGGGu---GGGu -3'
miRNA:   3'- gCCAGC-UACGa----ACCCACCCuuuuUCC- -5'
5978 3' -50.6 NC_001806.1 + 38094 0.67 0.986994
Target:  5'- uGGUCGGUGg--GGGUuGGAGGcGGGc -3'
miRNA:   3'- gCCAGCUACgaaCCCAcCCUUUuUCC- -5'
5978 3' -50.6 NC_001806.1 + 15298 0.67 0.986994
Target:  5'- uGGUCGGgcgugguaagGCUgaugGcGGUGGGAGAGucGGu -3'
miRNA:   3'- gCCAGCUa---------CGAa---C-CCACCCUUUUu-CC- -5'
5978 3' -50.6 NC_001806.1 + 145661 0.67 0.989929
Target:  5'- cCGGggUGAUcucuggcacGCggGGGUGGGAAGGgucGGGg -3'
miRNA:   3'- -GCCa-GCUA---------CGaaCCCACCCUUUU---UCC- -5'
5978 3' -50.6 NC_001806.1 + 34468 0.67 0.992319
Target:  5'- aGGagGAgaagGCggGGGgggGGGAGAcGGGg -3'
miRNA:   3'- gCCagCUa---CGaaCCCa--CCCUUUuUCC- -5'
5978 3' -50.6 NC_001806.1 + 32591 0.66 0.993235
Target:  5'- uGGUCGGacggGUaaguaacagagucUgacuaaGGGUGGGAGGGGGGg -3'
miRNA:   3'- gCCAGCUa---CG-------------Aa-----CCCACCCUUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.