Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5978 | 3' | -50.6 | NC_001806.1 | + | 15386 | 0.66 | 0.993331 |
Target: 5'- uGGUCugGAguuggGgUUGGGUGGuGGAGGAGa -3' miRNA: 3'- gCCAG--CUa----CgAACCCACC-CUUUUUCc -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 31584 | 0.66 | 0.993331 |
Target: 5'- gCGGg-GAUGCgUGGGagugggggugcgUGGGAGugGGGg -3' miRNA: 3'- -GCCagCUACGaACCC------------ACCCUUuuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 71516 | 0.66 | 0.994234 |
Target: 5'- uCGGUguuaUGGUGUgcgggcGGGcGGGggGGGGGg -3' miRNA: 3'- -GCCA----GCUACGaa----CCCaCCCuuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 25642 | 0.66 | 0.995036 |
Target: 5'- uGGg-GAggGCUgGGGcUGGGGAGGGGGc -3' miRNA: 3'- gCCagCUa-CGAaCCC-ACCCUUUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 55701 | 0.66 | 0.995036 |
Target: 5'- gGGUCGAUGUggGGGUGaccuccGGGc -3' miRNA: 3'- gCCAGCUACGaaCCCACccuuuuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 149854 | 0.66 | 0.995036 |
Target: 5'- gGGUCGuAUGCggcuggaGGGUcGcGGAcgGAGGg -3' miRNA: 3'- gCCAGC-UACGaa-----CCCA-C-CCUuuUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 10493 | 0.66 | 0.996915 |
Target: 5'- gGGUCGggGgUgGGGUcGGAAcuGGGg -3' miRNA: 3'- gCCAGCuaCgAaCCCAcCCUUuuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 28845 | 0.66 | 0.996915 |
Target: 5'- aGGacuuugUGAgGCggGGGgGGGAGAGGGGg -3' miRNA: 3'- gCCa-----GCUaCGaaCCCaCCCUUUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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