Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5978 | 3' | -50.6 | NC_001806.1 | + | 149854 | 0.66 | 0.995036 |
Target: 5'- gGGUCGuAUGCggcuggaGGGUcGcGGAcgGAGGg -3' miRNA: 3'- gCCAGC-UACGaa-----CCCA-C-CCUuuUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 145661 | 0.67 | 0.989929 |
Target: 5'- cCGGggUGAUcucuggcacGCggGGGUGGGAAGGgucGGGg -3' miRNA: 3'- -GCCa-GCUA---------CGaaCCCACCCUUUU---UCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 145518 | 0.7 | 0.940801 |
Target: 5'- uGGcucUCuAUGCUUGGGUcuuacugccuGGGggGGGGGa -3' miRNA: 3'- gCC---AGcUACGAACCCA----------CCCuuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 122004 | 0.68 | 0.979198 |
Target: 5'- uGGUUGuGUGUguaugUGGGUGGGu---GGGu -3' miRNA: 3'- gCCAGC-UACGa----ACCCACCCuuuuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 110704 | 0.72 | 0.88037 |
Target: 5'- uGGUCGAcgagGCcgccuucgGGG-GGGAGGAGGGa -3' miRNA: 3'- gCCAGCUa---CGaa------CCCaCCCUUUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 110115 | 0.68 | 0.979198 |
Target: 5'- aCGGUgGAUGUg-GGcGUGGGuauGGGGGa -3' miRNA: 3'- -GCCAgCUACGaaCC-CACCCuu-UUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 103422 | 0.7 | 0.957983 |
Target: 5'- gGGgacaaGAUGgg-GGGUGGGAuGAGGGg -3' miRNA: 3'- gCCag---CUACgaaCCCACCCUuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 93708 | 0.68 | 0.976796 |
Target: 5'- gGGUUGGg----GGGUGGGGGAAccuAGGg -3' miRNA: 3'- gCCAGCUacgaaCCCACCCUUUU---UCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 81649 | 0.7 | 0.949881 |
Target: 5'- uCGGUCGGgaggGCUgu-GUGGGgcGAAGGc -3' miRNA: 3'- -GCCAGCUa---CGAaccCACCCuuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 71516 | 0.66 | 0.994234 |
Target: 5'- uCGGUguuaUGGUGUgcgggcGGGcGGGggGGGGGg -3' miRNA: 3'- -GCCA----GCUACGaa----CCCaCCCuuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 69498 | 0.72 | 0.88037 |
Target: 5'- gGGUCGAacgUGUUUGGGUuggcgcGGGAAuacGGGu -3' miRNA: 3'- gCCAGCU---ACGAACCCA------CCCUUuu-UCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 55701 | 0.66 | 0.995036 |
Target: 5'- gGGUCGAUGUggGGGUGaccuccGGGc -3' miRNA: 3'- gCCAGCUACGaaCCCACccuuuuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 38094 | 0.67 | 0.986994 |
Target: 5'- uGGUCGGUGg--GGGUuGGAGGcGGGc -3' miRNA: 3'- gCCAGCUACgaaCCCAcCCUUUuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 34772 | 0.7 | 0.940801 |
Target: 5'- cCGG-CGggGCgguucgGGGgggGGGggGGGGGg -3' miRNA: 3'- -GCCaGCuaCGaa----CCCa--CCCuuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 34468 | 0.67 | 0.992319 |
Target: 5'- aGGagGAgaagGCggGGGgggGGGAGAcGGGg -3' miRNA: 3'- gCCagCUa---CGaaCCCa--CCCUUUuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 34046 | 0.7 | 0.957983 |
Target: 5'- -aGUgGggGCguggggUGGGUGGGAGAAGGc -3' miRNA: 3'- gcCAgCuaCGa-----ACCCACCCUUUUUCc -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 32591 | 0.66 | 0.993235 |
Target: 5'- uGGUCGGacggGUaaguaacagagucUgacuaaGGGUGGGAGGGGGGg -3' miRNA: 3'- gCCAGCUa---CG-------------Aa-----CCCACCCUUUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 32023 | 0.77 | 0.656453 |
Target: 5'- gGGUgGG-GCggagGGGUGGGggGGGGGg -3' miRNA: 3'- gCCAgCUaCGaa--CCCACCCuuUUUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 31584 | 0.66 | 0.993331 |
Target: 5'- gCGGg-GAUGCgUGGGagugggggugcgUGGGAGugGGGg -3' miRNA: 3'- -GCCagCUACGaACCC------------ACCCUUuuUCC- -5' |
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5978 | 3' | -50.6 | NC_001806.1 | + | 30804 | 0.73 | 0.841225 |
Target: 5'- -cGUCGGUGCccUGGGaGGGAGAcaaGAGGa -3' miRNA: 3'- gcCAGCUACGa-ACCCaCCCUUU---UUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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