Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 840 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 874 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 908 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 942 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 993 | 0.66 | 0.674106 |
Target: 5'- cGCCcccgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua-GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 1026 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 1060 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 1094 | 0.66 | 0.712726 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 1145 | 0.66 | 0.674106 |
Target: 5'- cGCCccucgCCCCCUCCCGCcCcUCGa- -3' miRNA: 3'- cCGGcua--GGGGGAGGGCGcGaAGCag -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 1253 | 0.7 | 0.437761 |
Target: 5'- cGGcCCGuuacagcaccccGUCCCCCUCgaaCGCGCcgccgUCGUCu -3' miRNA: 3'- -CC-GGC------------UAGGGGGAGg--GCGCGa----AGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 1418 | 0.66 | 0.674106 |
Target: 5'- uGGCCGAggCCCagcgaaUCCCGgGCggCGcCg -3' miRNA: 3'- -CCGGCUagGGGg-----AGGGCgCGaaGCaG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 2955 | 0.67 | 0.629096 |
Target: 5'- gGGCCGGgacucuugcgcuugCgCCCCUCCCGCGgcgCGg- -3' miRNA: 3'- -CCGGCUa-------------G-GGGGAGGGCGCgaaGCag -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 3746 | 0.7 | 0.482069 |
Target: 5'- aGGCUGGUCagcaggaagCCCUUCUGCGCgcggUCGUa -3' miRNA: 3'- -CCGGCUAGg--------GGGAGGGCGCGa---AGCAg -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 4961 | 0.67 | 0.664352 |
Target: 5'- gGGCCc--UCCCgUCCCGCcggGCgUCGUCg -3' miRNA: 3'- -CCGGcuaGGGGgAGGGCG---CGaAGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 5329 | 1.1 | 0.00091 |
Target: 5'- cGGCCGAUCCCCCUCCCGCGCUUCGUCc -3' miRNA: 3'- -CCGGCUAGGGGGAGGGCGCGAAGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 19722 | 0.66 | 0.683827 |
Target: 5'- cGGgUGAgCCCCCUCCUcCGCccccgCGUCc -3' miRNA: 3'- -CCgGCUaGGGGGAGGGcGCGaa---GCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 19950 | 0.67 | 0.615375 |
Target: 5'- gGGCgGGUCuuCCCC-CCCGCGUccgCGUg -3' miRNA: 3'- -CCGgCUAG--GGGGaGGGCGCGaa-GCAg -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 20175 | 0.69 | 0.537915 |
Target: 5'- gGGCCcg-CCCCCggggCCgGCGCggaGUCg -3' miRNA: 3'- -CCGGcuaGGGGGa---GGgCGCGaagCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 20482 | 0.67 | 0.644782 |
Target: 5'- gGGCCccgCCCCCUgCCCGUuCcUCGUUa -3' miRNA: 3'- -CCGGcuaGGGGGA-GGGCGcGaAGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 23105 | 0.67 | 0.664352 |
Target: 5'- cGCCGGggCCCUgggcCCCGCGCUgccgCGg- -3' miRNA: 3'- cCGGCUagGGGGa---GGGCGCGAa---GCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home