miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5978 5' -61.3 NC_001806.1 + 151122 0.7 0.437761
Target:  5'- gGGCUccgGcgCCCCCUCCC-CGCccgcgCGUCg -3'
miRNA:   3'- -CCGG---CuaGGGGGAGGGcGCGaa---GCAG- -5'
5978 5' -61.3 NC_001806.1 + 150666 0.67 0.615375
Target:  5'- uGGCCGggCCCCg--CCGCGCUggCGg- -3'
miRNA:   3'- -CCGGCuaGGGGgagGGCGCGAa-GCag -5'
5978 5' -61.3 NC_001806.1 + 147550 0.67 0.654575
Target:  5'- cGGCC---CCCCCgagCCgCGCGCcacCGUCg -3'
miRNA:   3'- -CCGGcuaGGGGGa--GG-GCGCGaa-GCAG- -5'
5978 5' -61.3 NC_001806.1 + 147320 0.67 0.615375
Target:  5'- uGGCCGcgCCCCC-CCgGCcCUgaGUCg -3'
miRNA:   3'- -CCGGCuaGGGGGaGGgCGcGAagCAG- -5'
5978 5' -61.3 NC_001806.1 + 145975 0.73 0.313338
Target:  5'- uGGCCGA-CCCCCUUuuGgGCgcccCGUCc -3'
miRNA:   3'- -CCGGCUaGGGGGAGggCgCGaa--GCAG- -5'
5978 5' -61.3 NC_001806.1 + 142867 0.75 0.244509
Target:  5'- -cCCGuAUCCCCgUUCCCGCGCUuuUCGUUg -3'
miRNA:   3'- ccGGC-UAGGGG-GAGGGCGCGA--AGCAG- -5'
5978 5' -61.3 NC_001806.1 + 142062 0.67 0.664352
Target:  5'- cGGCCGGUucgcCCCCCgaaCCCGgacggGUUUcCGUCg -3'
miRNA:   3'- -CCGGCUA----GGGGGa--GGGCg----CGAA-GCAG- -5'
5978 5' -61.3 NC_001806.1 + 120008 0.66 0.69351
Target:  5'- cGCuCGAggugCCCCUgcgccaCCCGCGCccCGUCc -3'
miRNA:   3'- cCG-GCUa---GGGGGa-----GGGCGCGaaGCAG- -5'
5978 5' -61.3 NC_001806.1 + 118926 0.66 0.683827
Target:  5'- uGCCGGcacacccuggCCUCCUUCCGCGUg-CGUCc -3'
miRNA:   3'- cCGGCUa---------GGGGGAGGGCGCGaaGCAG- -5'
5978 5' -61.3 NC_001806.1 + 102839 0.69 0.519021
Target:  5'- aGCCGGUCgCCCCgcggCCCGCGUa----- -3'
miRNA:   3'- cCGGCUAG-GGGGa---GGGCGCGaagcag -5'
5978 5' -61.3 NC_001806.1 + 87377 0.7 0.446438
Target:  5'- uGGCCGcUCCUcguCCUCCCGgGCUgCGg- -3'
miRNA:   3'- -CCGGCuAGGG---GGAGGGCgCGAaGCag -5'
5978 5' -61.3 NC_001806.1 + 79632 0.74 0.274111
Target:  5'- cGCCcccccgCCUCCUCCCGCGCUucugccgcuucuUCGUCc -3'
miRNA:   3'- cCGGcua---GGGGGAGGGCGCGA------------AGCAG- -5'
5978 5' -61.3 NC_001806.1 + 79545 0.69 0.547452
Target:  5'- cGGCCGGcgcccgugggCCCCCgcgacgacuUCCgGCGCUUgcCGUCc -3'
miRNA:   3'- -CCGGCUa---------GGGGG---------AGGgCGCGAA--GCAG- -5'
5978 5' -61.3 NC_001806.1 + 71220 0.66 0.722244
Target:  5'- cGGCgUGuuUCgCgCUUCCGCGUUUCGUCc -3'
miRNA:   3'- -CCG-GCu-AGgGgGAGGGCGCGAAGCAG- -5'
5978 5' -61.3 NC_001806.1 + 70593 0.71 0.420701
Target:  5'- uGGUCGcGUCCCUCgcgagCCUGCGUUcCGUCa -3'
miRNA:   3'- -CCGGC-UAGGGGGa----GGGCGCGAaGCAG- -5'
5978 5' -61.3 NC_001806.1 + 67355 0.68 0.556079
Target:  5'- aGCCGAUCagggccgCCCC-CCCGCGCaUgGUg -3'
miRNA:   3'- cCGGCUAG-------GGGGaGGGCGCGaAgCAg -5'
5978 5' -61.3 NC_001806.1 + 65680 0.79 0.134116
Target:  5'- gGGCCGccggccuccuGUCCCCCaaccggggCCCGCGCUUCGa- -3'
miRNA:   3'- -CCGGC----------UAGGGGGa-------GGGCGCGAAGCag -5'
5978 5' -61.3 NC_001806.1 + 65457 0.68 0.56089
Target:  5'- uGCCGcggCCCCCggguccugggggcgCCCGCGCaccaCGUCu -3'
miRNA:   3'- cCGGCua-GGGGGa-------------GGGCGCGaa--GCAG- -5'
5978 5' -61.3 NC_001806.1 + 65203 0.67 0.644782
Target:  5'- gGGCCGAcuggaUCCCCCUCCCccccgaauaccGCagaGCggCGcCg -3'
miRNA:   3'- -CCGGCU-----AGGGGGAGGG-----------CG---CGaaGCaG- -5'
5978 5' -61.3 NC_001806.1 + 57049 0.66 0.712726
Target:  5'- gGGCCGGggCCCCCggCUGCGUgcCGg- -3'
miRNA:   3'- -CCGGCUa-GGGGGagGGCGCGaaGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.