Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 147550 | 0.67 | 0.654575 |
Target: 5'- cGGCC---CCCCCgagCCgCGCGCcacCGUCg -3' miRNA: 3'- -CCGGcuaGGGGGa--GG-GCGCGaa-GCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 65203 | 0.67 | 0.644782 |
Target: 5'- gGGCCGAcuggaUCCCCCUCCCccccgaauaccGCagaGCggCGcCg -3' miRNA: 3'- -CCGGCU-----AGGGGGAGGG-----------CG---CGaaGCaG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 20482 | 0.67 | 0.644782 |
Target: 5'- gGGCCccgCCCCCUgCCCGUuCcUCGUUa -3' miRNA: 3'- -CCGGcuaGGGGGA-GGGCGcGaAGCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 30764 | 0.67 | 0.643802 |
Target: 5'- gGGCCGcGUCCUCCUCCgcuuccgccuccuCGgGCggggcCGUCg -3' miRNA: 3'- -CCGGC-UAGGGGGAGG-------------GCgCGaa---GCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 2955 | 0.67 | 0.629096 |
Target: 5'- gGGCCGGgacucuugcgcuugCgCCCCUCCCGCGgcgCGg- -3' miRNA: 3'- -CCGGCUa-------------G-GGGGAGGGCGCgaaGCag -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 19950 | 0.67 | 0.615375 |
Target: 5'- gGGCgGGUCuuCCCC-CCCGCGUccgCGUg -3' miRNA: 3'- -CCGgCUAG--GGGGaGGGCGCGaa-GCAg -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 147320 | 0.67 | 0.615375 |
Target: 5'- uGGCCGcgCCCCC-CCgGCcCUgaGUCg -3' miRNA: 3'- -CCGGCuaGGGGGaGGgCGcGAagCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 150666 | 0.67 | 0.615375 |
Target: 5'- uGGCCGggCCCCg--CCGCGCUggCGg- -3' miRNA: 3'- -CCGGCuaGGGGgagGGCGCGAa-GCag -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 27517 | 0.68 | 0.576355 |
Target: 5'- -cCCGGUauucCCCgCCUCCCGCGCcgcgCGUa -3' miRNA: 3'- ccGGCUA----GGG-GGAGGGCGCGaa--GCAg -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 65457 | 0.68 | 0.56089 |
Target: 5'- uGCCGcggCCCCCggguccugggggcgCCCGCGCaccaCGUCu -3' miRNA: 3'- cCGGCua-GGGGGa-------------GGGCGCGaa--GCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 49127 | 0.68 | 0.55704 |
Target: 5'- aGGCgCGcAUCCaCCCgccCCCGCGCcUCGcCc -3' miRNA: 3'- -CCG-GC-UAGG-GGGa--GGGCGCGaAGCaG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 67355 | 0.68 | 0.556079 |
Target: 5'- aGCCGAUCagggccgCCCC-CCCGCGCaUgGUg -3' miRNA: 3'- cCGGCUAG-------GGGGaGGGCGCGaAgCAg -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 79545 | 0.69 | 0.547452 |
Target: 5'- cGGCCGGcgcccgugggCCCCCgcgacgacuUCCgGCGCUUgcCGUCc -3' miRNA: 3'- -CCGGCUa---------GGGGG---------AGGgCGCGAA--GCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 20175 | 0.69 | 0.537915 |
Target: 5'- gGGCCcg-CCCCCggggCCgGCGCggaGUCg -3' miRNA: 3'- -CCGGcuaGGGGGa---GGgCGCGaagCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 102839 | 0.69 | 0.519021 |
Target: 5'- aGCCGGUCgCCCCgcggCCCGCGUa----- -3' miRNA: 3'- cCGGCUAG-GGGGa---GGGCGCGaagcag -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 3746 | 0.7 | 0.482069 |
Target: 5'- aGGCUGGUCagcaggaagCCCUUCUGCGCgcggUCGUa -3' miRNA: 3'- -CCGGCUAGg--------GGGAGGGCGCGa---AGCAg -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 87377 | 0.7 | 0.446438 |
Target: 5'- uGGCCGcUCCUcguCCUCCCGgGCUgCGg- -3' miRNA: 3'- -CCGGCuAGGG---GGAGGGCgCGAaGCag -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 1253 | 0.7 | 0.437761 |
Target: 5'- cGGcCCGuuacagcaccccGUCCCCCUCgaaCGCGCcgccgUCGUCu -3' miRNA: 3'- -CC-GGC------------UAGGGGGAGg--GCGCGa----AGCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 151122 | 0.7 | 0.437761 |
Target: 5'- gGGCUccgGcgCCCCCUCCC-CGCccgcgCGUCg -3' miRNA: 3'- -CCGG---CuaGGGGGAGGGcGCGaa---GCAG- -5' |
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5978 | 5' | -61.3 | NC_001806.1 | + | 53405 | 0.7 | 0.437761 |
Target: 5'- aGCCGGUgaacgCCUCCgCCCGUGCUgcCGUCg -3' miRNA: 3'- cCGGCUA-----GGGGGaGGGCGCGAa-GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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