Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 70593 | 0.71 | 0.420701 |
Target: 5'- uGGUCGcGUCCCUCgcgagCCUGCGUUcCGUCa -3' miRNA: 3'- -CCGGC-UAGGGGGa----GGGCGCGAaGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 145975 | 0.73 | 0.313338 |
Target: 5'- uGGCCGA-CCCCCUUuuGgGCgcccCGUCc -3' miRNA: 3'- -CCGGCUaGGGGGAGggCgCGaa--GCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 79632 | 0.74 | 0.274111 |
Target: 5'- cGCCcccccgCCUCCUCCCGCGCUucugccgcuucuUCGUCc -3' miRNA: 3'- cCGGcua---GGGGGAGGGCGCGA------------AGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 142867 | 0.75 | 0.244509 |
Target: 5'- -cCCGuAUCCCCgUUCCCGCGCUuuUCGUUg -3' miRNA: 3'- ccGGC-UAGGGG-GAGGGCGCGA--AGCAG- -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 65680 | 0.79 | 0.134116 |
Target: 5'- gGGCCGccggccuccuGUCCCCCaaccggggCCCGCGCUUCGa- -3' miRNA: 3'- -CCGGC----------UAGGGGGa-------GGGCGCGAAGCag -5' |
|||||||
5978 | 5' | -61.3 | NC_001806.1 | + | 5329 | 1.1 | 0.00091 |
Target: 5'- cGGCCGAUCCCCCUCCCGCGCUUCGUCc -3' miRNA: 3'- -CCGGCUAGGGGGAGGGCGCGAAGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home