miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 106366 0.68 0.310854
Target:  5'- -cGGuuGGGGCCCGgcGGCaCCCGACg-- -3'
miRNA:   3'- ccCCcgCCCCGGGC--CCG-GGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 5231 0.68 0.310854
Target:  5'- gGGGGGagGGGGCgagacccaCGGaCCCCGACg-- -3'
miRNA:   3'- -CCCCCg-CCCCGg-------GCCcGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 111204 0.68 0.310199
Target:  5'- uGGGGauagccuGCGcGGCCgGGGCCUCGAUg-- -3'
miRNA:   3'- -CCCC-------CGCcCCGGgCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 74974 0.68 0.308892
Target:  5'- uGGGGGCugcuGGGGCaguaccgagaugccCUGGaGCaCCCGACUcCg -3'
miRNA:   3'- -CCCCCG----CCCCG--------------GGCC-CG-GGGCUGAaG- -5'
5979 3' -68.3 NC_001806.1 + 65444 0.68 0.304353
Target:  5'- aGGGaGCGGGGgaugccgcggccCCCGGGUCCUGGg--- -3'
miRNA:   3'- cCCC-CGCCCC------------GGGCCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 4828 0.68 0.304353
Target:  5'- cGGGGCGGcgaGGCCgCGGGgUCgGGCgUCg -3'
miRNA:   3'- cCCCCGCC---CCGG-GCCCgGGgCUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 73460 0.68 0.304353
Target:  5'- cGGGGUGGccGGCCCGGccgccGCCCUG-CUg- -3'
miRNA:   3'- cCCCCGCC--CCGGGCC-----CGGGGCuGAag -5'
5979 3' -68.3 NC_001806.1 + 106693 0.68 0.304353
Target:  5'- cGGGGGCucuuCCCGGGCCCCcgGGCg-- -3'
miRNA:   3'- -CCCCCGccccGGGCCCGGGG--CUGaag -5'
5979 3' -68.3 NC_001806.1 + 140444 0.68 0.304353
Target:  5'- uGGGGGgGGGGCgguuacUCGGcCCCCGAg--- -3'
miRNA:   3'- -CCCCCgCCCCG------GGCCcGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 149836 0.68 0.304353
Target:  5'- cGGGGCGGGGCUCcauggGGGUCguaugCGGCUg- -3'
miRNA:   3'- cCCCCGCCCCGGG-----CCCGGg----GCUGAag -5'
5979 3' -68.3 NC_001806.1 + 84468 0.68 0.297957
Target:  5'- cGGGccGCGGGGCCCGaGGCCau--CUUUa -3'
miRNA:   3'- cCCC--CGCCCCGGGC-CCGGggcuGAAG- -5'
5979 3' -68.3 NC_001806.1 + 39192 0.68 0.294169
Target:  5'- cGGcGGCcuugucugcguucuuGGGGgCCGGGCCCCGcCg-- -3'
miRNA:   3'- cCC-CCG---------------CCCCgGGCCCGGGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 142022 0.68 0.291665
Target:  5'- aGGGcGGCGaGGaGCgCCGccGGCCCUGACg-- -3'
miRNA:   3'- -CCC-CCGC-CC-CG-GGC--CCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 26833 0.68 0.291665
Target:  5'- cGGGGagGGGGCgCCGGaGCCCCccgcGACc-- -3'
miRNA:   3'- cCCCCg-CCCCG-GGCC-CGGGG----CUGaag -5'
5979 3' -68.3 NC_001806.1 + 89779 0.68 0.291665
Target:  5'- cGGGGCgugggaGGGGCUgGGGCggaCCGGCa-- -3'
miRNA:   3'- cCCCCG------CCCCGGgCCCGg--GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 49597 0.68 0.285479
Target:  5'- cGGcGGCGGGGCCCGuuCCCCGcCc-- -3'
miRNA:   3'- cCC-CCGCCCCGGGCccGGGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 16875 0.68 0.284866
Target:  5'- cGGGGGCGGGGaguCCaGGCacgcgucCUCGGCUg- -3'
miRNA:   3'- -CCCCCGCCCCg--GGcCCG-------GGGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 82738 0.68 0.279395
Target:  5'- cGGGGCGGcGGCgucgUCGGGCgcuuuuauaggCCCGGCguacgUCa -3'
miRNA:   3'- cCCCCGCC-CCG----GGCCCG-----------GGGCUGa----AG- -5'
5979 3' -68.3 NC_001806.1 + 24539 0.68 0.279395
Target:  5'- -cGGGCGGcGGCCuCGGGgaCCaCCGACg-- -3'
miRNA:   3'- ccCCCGCC-CCGG-GCCC--GG-GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 27260 0.68 0.275795
Target:  5'- cGGGGGCGGgacuggccaaucggcGGCCgccagcgcggCGGGgCCCGGCc-- -3'
miRNA:   3'- -CCCCCGCC---------------CCGG----------GCCCgGGGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.