miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 25904 0.67 0.359298
Target:  5'- aGGcGGGCGGcGGUCCGGGCggcgugcgcgcgCgCGGCg-- -3'
miRNA:   3'- -CC-CCCGCC-CCGGGCCCG------------GgGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 62244 0.67 0.359298
Target:  5'- cGGGGGaGaGGGCUgGGGCCgCGGaaUCc -3'
miRNA:   3'- -CCCCCgC-CCCGGgCCCGGgGCUgaAG- -5'
5979 3' -68.3 NC_001806.1 + 65295 0.67 0.359298
Target:  5'- aGGaGGaGgGGGGCCCccaaGGGCCUCGGu--- -3'
miRNA:   3'- -CC-CC-CgCCCCGGG----CCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 146174 0.67 0.359298
Target:  5'- gGGGaucGGUGGucaggcaGCCCGGGCCgCGGCUc- -3'
miRNA:   3'- -CCC---CCGCCc------CGGGCCCGGgGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 24897 0.67 0.352064
Target:  5'- uGGGGGCGgaggcGGGCuuGGccacGCCCCcGCggCg -3'
miRNA:   3'- -CCCCCGC-----CCCGggCC----CGGGGcUGaaG- -5'
5979 3' -68.3 NC_001806.1 + 150248 0.67 0.352064
Target:  5'- aGGGGCuuGGCCugcguCGGuGCCCCGggGCUUCc -3'
miRNA:   3'- cCCCCGccCCGG-----GCC-CGGGGC--UGAAG- -5'
5979 3' -68.3 NC_001806.1 + 147507 0.67 0.352064
Target:  5'- aGGGGGCGGcGCCgCGGGagggCCCGuGCc-- -3'
miRNA:   3'- -CCCCCGCCcCGG-GCCCg---GGGC-UGaag -5'
5979 3' -68.3 NC_001806.1 + 13015 0.67 0.352064
Target:  5'- uGGGGCcuuGGGCCCGuGCcaCCCGGCg-- -3'
miRNA:   3'- cCCCCGc--CCCGGGCcCG--GGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 11855 0.67 0.351346
Target:  5'- aGGGGCGGGuugguauacgcucGCCgGGGCCa-GACg-- -3'
miRNA:   3'- cCCCCGCCC-------------CGGgCCCGGggCUGaag -5'
5979 3' -68.3 NC_001806.1 + 73996 0.67 0.347773
Target:  5'- cGGGGCggccccgcagGGGGCuCCgcgcccacccccccuGGGCCCCGAg--- -3'
miRNA:   3'- cCCCCG----------CCCCG-GG---------------CCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 77953 0.67 0.344934
Target:  5'- gGGGGugacGCGGcGGCCCcgGGGCCgCCG-CUc- -3'
miRNA:   3'- -CCCC----CGCC-CCGGG--CCCGG-GGCuGAag -5'
5979 3' -68.3 NC_001806.1 + 101015 0.67 0.344934
Target:  5'- cGGGaGaGCGGcGGCCCGcGGCgCUCGAaaaUCg -3'
miRNA:   3'- -CCC-C-CGCC-CCGGGC-CCG-GGGCUga-AG- -5'
5979 3' -68.3 NC_001806.1 + 27684 0.67 0.337908
Target:  5'- cGGGaaGGCGGGaagcCCCGGGgCaCCGACg-- -3'
miRNA:   3'- -CCC--CCGCCCc---GGGCCCgG-GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 22883 0.67 0.337211
Target:  5'- cGGGGCuggccGGGGCCCGGcccgccaGCCCCccgcGGCc-- -3'
miRNA:   3'- cCCCCG-----CCCCGGGCC-------CGGGG----CUGaag -5'
5979 3' -68.3 NC_001806.1 + 37841 0.67 0.330987
Target:  5'- cGGGGgGGGuGCuuGGcgcacGCCCCGugUcCg -3'
miRNA:   3'- cCCCCgCCC-CGggCC-----CGGGGCugAaG- -5'
5979 3' -68.3 NC_001806.1 + 144999 0.67 0.31746
Target:  5'- aGGGGCcccGGCCCGGGgCCCC-ACa-- -3'
miRNA:   3'- cCCCCGcc-CCGGGCCC-GGGGcUGaag -5'
5979 3' -68.3 NC_001806.1 + 20646 0.67 0.31746
Target:  5'- -cGGGCcGcGGCCaCGGGcCCCCGGCg-- -3'
miRNA:   3'- ccCCCGcC-CCGG-GCCC-GGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 95405 0.67 0.31746
Target:  5'- cGGGGGCGaGGacgaagaccgucGCCgCGGGCCCgGGg--- -3'
miRNA:   3'- -CCCCCGC-CC------------CGG-GCCCGGGgCUgaag -5'
5979 3' -68.3 NC_001806.1 + 106866 0.67 0.316794
Target:  5'- cGGGGGaCGcgggcgccgagcaGGGCCCGcGCCCCccucuCUUCu -3'
miRNA:   3'- -CCCCC-GC-------------CCCGGGCcCGGGGcu---GAAG- -5'
5979 3' -68.3 NC_001806.1 + 79273 0.67 0.316794
Target:  5'- cGGaGGGCucguuGGGGCCCGgaagccuGGCCCCcACg-- -3'
miRNA:   3'- -CC-CCCG-----CCCCGGGC-------CCGGGGcUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.