miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 100390 0.73 0.134714
Target:  5'- cGGGcGGCgcgGGGGCCgGGGUgCCCGAUgUCg -3'
miRNA:   3'- -CCC-CCG---CCCCGGgCCCG-GGGCUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 144967 0.73 0.137947
Target:  5'- --uGGCGGcccGGCCCgGGGCCCCGGCg-- -3'
miRNA:   3'- cccCCGCC---CCGGG-CCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 147732 0.73 0.137947
Target:  5'- cGGGGCcacggccgcgcgGGGGCgCgCGGGUCCCGACg-- -3'
miRNA:   3'- cCCCCG------------CCCCG-G-GCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 20729 0.72 0.151603
Target:  5'- gGGGGGCggGGGGCCgGcGGCCUCcGCUg- -3'
miRNA:   3'- -CCCCCG--CCCCGGgC-CCGGGGcUGAag -5'
5979 3' -68.3 NC_001806.1 + 14055 0.72 0.158882
Target:  5'- uGGGGGcCGGGGCCaCGGauuuccugguuaGCCCgGugUUg -3'
miRNA:   3'- -CCCCC-GCCCCGG-GCC------------CGGGgCugAAg -5'
5979 3' -68.3 NC_001806.1 + 56509 0.72 0.158882
Target:  5'- uGGGGccacaGCGGcaGGCCCGGGC-CCGGCgUUCc -3'
miRNA:   3'- -CCCC-----CGCC--CCGGGCCCGgGGCUG-AAG- -5'
5979 3' -68.3 NC_001806.1 + 23101 0.72 0.162639
Target:  5'- uGGucGcCGGGGCCCuGGGCCCCGcGCUg- -3'
miRNA:   3'- -CCccC-GCCCCGGG-CCCGGGGC-UGAag -5'
5979 3' -68.3 NC_001806.1 + 72551 0.72 0.162639
Target:  5'- aGGGGGUagGGGGCCCGGGgccacaCCCGcCc-- -3'
miRNA:   3'- -CCCCCG--CCCCGGGCCCg-----GGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 3316 0.72 0.166475
Target:  5'- cGGGGaaGCGGGGCCCgcGGGUCCCuccGGCc-- -3'
miRNA:   3'- -CCCC--CGCCCCGGG--CCCGGGG---CUGaag -5'
5979 3' -68.3 NC_001806.1 + 32962 0.72 0.169997
Target:  5'- -cGGGcCGGGGCCCcuuggguccgccgGGGCCCCGGg--- -3'
miRNA:   3'- ccCCC-GCCCCGGG-------------CCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 41377 0.72 0.170393
Target:  5'- aGGGGGCaucacGGGGCCCuGGGCgCgGAUg-- -3'
miRNA:   3'- -CCCCCG-----CCCCGGG-CCCGgGgCUGaag -5'
5979 3' -68.3 NC_001806.1 + 147890 0.72 0.171983
Target:  5'- gGGGGGCgggucuguugacaagGGGGCCCGuccGGCCCCucGGCc-- -3'
miRNA:   3'- -CCCCCG---------------CCCCGGGC---CCGGGG--CUGaag -5'
5979 3' -68.3 NC_001806.1 + 23939 0.71 0.174393
Target:  5'- cGGcGGCGGGGCCUggggGGGCCgCCGGa--- -3'
miRNA:   3'- cCC-CCGCCCCGGG----CCCGG-GGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 20617 0.71 0.174393
Target:  5'- cGGauGGGCGGGGCCgGGGgUUCGACc-- -3'
miRNA:   3'- -CC--CCCGCCCCGGgCCCgGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 66020 0.71 0.174393
Target:  5'- aGGGGUGGGGCgCGGGCCa-G-UUUCa -3'
miRNA:   3'- cCCCCGCCCCGgGCCCGGggCuGAAG- -5'
5979 3' -68.3 NC_001806.1 + 92926 0.71 0.178064
Target:  5'- cGGGGCGGgccuggaGGCCgGGGCCCgCGcGCUg- -3'
miRNA:   3'- cCCCCGCC-------CCGGgCCCGGG-GC-UGAag -5'
5979 3' -68.3 NC_001806.1 + 11339 0.71 0.182644
Target:  5'- gGGGGGCGucGGaaGCCCagccgccccagcGGGCUCCGACUcuUCg -3'
miRNA:   3'- -CCCCCGC--CC--CGGG------------CCCGGGGCUGA--AG- -5'
5979 3' -68.3 NC_001806.1 + 37956 0.71 0.186897
Target:  5'- cGGGGCGGGGUCCcccaGGGUUgCGAUUg- -3'
miRNA:   3'- cCCCCGCCCCGGG----CCCGGgGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 4744 0.71 0.186897
Target:  5'- -cGGGcCGGGGCCCGGuCgCCGGCggcgUCg -3'
miRNA:   3'- ccCCC-GCCCCGGGCCcGgGGCUGa---AG- -5'
5979 3' -68.3 NC_001806.1 + 54120 0.71 0.186897
Target:  5'- gGGGGGUgucccGGGGCCCagGGGCCgguaggCGugUUCc -3'
miRNA:   3'- -CCCCCG-----CCCCGGG--CCCGGg-----GCugAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.