miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 5771 1.09 0.000284
Target:  5'- aGGGGGCGGGGCCCGGGCCCCGACUUCc -3'
miRNA:   3'- -CCCCCGCCCCGGGCCCGGGGCUGAAG- -5'
5979 3' -68.3 NC_001806.1 + 2815 0.82 0.030004
Target:  5'- cGGGGGC-GGGCUCGGGCCCCGGg--- -3'
miRNA:   3'- -CCCCCGcCCCGGGCCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 3350 0.81 0.032355
Target:  5'- gGGGGGCuGGcGGgCCGGGCCCCGGCc-- -3'
miRNA:   3'- -CCCCCG-CC-CCgGGCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 3124 0.8 0.040545
Target:  5'- cGGGucccgcggcagcGCGGGGCCCaGGGCCCCGGCg-- -3'
miRNA:   3'- cCCC------------CGCCCCGGG-CCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 95296 0.79 0.052553
Target:  5'- uGGGGGCGGGgggcgcggcggacgcGCCCaagggcggcgcGGGCCCCGACg-- -3'
miRNA:   3'- -CCCCCGCCC---------------CGGG-----------CCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 41829 0.78 0.056058
Target:  5'- cGGGGGCGGGcGUCaGGGCCCCGGg--- -3'
miRNA:   3'- -CCCCCGCCC-CGGgCCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 56687 0.78 0.057466
Target:  5'- gGGGGGacgGGGGCCCGGGaaCCCCGGg-UCg -3'
miRNA:   3'- -CCCCCg--CCCCGGGCCC--GGGGCUgaAG- -5'
5979 3' -68.3 NC_001806.1 + 4182 0.78 0.058908
Target:  5'- cGGGGGCgGGGGCCCGGcGCCgggccaCGGCUc- -3'
miRNA:   3'- -CCCCCG-CCCCGGGCC-CGGg-----GCUGAag -5'
5979 3' -68.3 NC_001806.1 + 20466 0.77 0.068324
Target:  5'- cGGGaaguCGGGGCCCGGGCCCCGcCc-- -3'
miRNA:   3'- cCCCc---GCCCCGGGCCCGGGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 30643 0.77 0.070028
Target:  5'- gGGGGGCGcggccaggguGGGCCCGGGacccCCCUGACgUCc -3'
miRNA:   3'- -CCCCCGC----------CCCGGGCCC----GGGGCUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 57033 0.77 0.07539
Target:  5'- uGGGuGGCcGGGCCCGGGgccggggcCCCCGGCUg- -3'
miRNA:   3'- -CCC-CCGcCCCGGGCCC--------GGGGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 95952 0.76 0.08521
Target:  5'- uGGGGGCggGGGGCUCGGGUgCUGAUUg- -3'
miRNA:   3'- -CCCCCG--CCCCGGGCCCGgGGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 147684 0.76 0.08521
Target:  5'- cGGGGGcCGGGGCgcgggggCGGGCCCCGGaggCg -3'
miRNA:   3'- -CCCCC-GCCCCGg------GCCCGGGGCUgaaG- -5'
5979 3' -68.3 NC_001806.1 + 151295 0.76 0.087315
Target:  5'- gGGGGGCGGcGGCggugggCCGGGCCuCUGGCg-- -3'
miRNA:   3'- -CCCCCGCC-CCG------GGCCCGG-GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 26254 0.75 0.096242
Target:  5'- uGGcGGCGGGcaGCCCGGGCCCCccgcggccgaGACUa- -3'
miRNA:   3'- cCC-CCGCCC--CGGGCCCGGGG----------CUGAag -5'
5979 3' -68.3 NC_001806.1 + 2724 0.74 0.11674
Target:  5'- aGGGGGuCGGGGCCCucggcGGGCCggcgCGACa-- -3'
miRNA:   3'- -CCCCC-GCCCCGGG-----CCCGGg---GCUGaag -5'
5979 3' -68.3 NC_001806.1 + 9772 0.74 0.119572
Target:  5'- uGGGGGCgcguGGGGag-GGGCCCCGACg-- -3'
miRNA:   3'- -CCCCCG----CCCCgggCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 109239 0.74 0.119572
Target:  5'- -cGGGCGGGGCggaaucCUGGGCCCCGGg--- -3'
miRNA:   3'- ccCCCGCCCCG------GGCCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 144821 0.73 0.125429
Target:  5'- aGGGGcccccgaccGCGGcGGUCCGGGCCCCGuCc-- -3'
miRNA:   3'- -CCCC---------CGCC-CCGGGCCCGGGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 83816 0.73 0.125429
Target:  5'- aGGGGGCGGGGUCggcgCGGGaUCCGGCa-- -3'
miRNA:   3'- -CCCCCGCCCCGG----GCCCgGGGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.