miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 2524 0.71 0.195667
Target:  5'- cGGGGGC-GGGCCCGGcGCaCCGcGCggCg -3'
miRNA:   3'- -CCCCCGcCCCGGGCC-CGgGGC-UGaaG- -5'
5979 3' -68.3 NC_001806.1 + 2661 0.68 0.273416
Target:  5'- -aGGGCGGcGGCCgCGGGCgCCGcCg-- -3'
miRNA:   3'- ccCCCGCC-CCGG-GCCCGgGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 2724 0.74 0.11674
Target:  5'- aGGGGGuCGGGGCCCucggcGGGCCggcgCGACa-- -3'
miRNA:   3'- -CCCCC-GCCCCGGG-----CCCGGg---GCUGaag -5'
5979 3' -68.3 NC_001806.1 + 2764 0.66 0.374075
Target:  5'- cGGGGCGcgggcGGGCCUGcGCCgCGGCg-- -3'
miRNA:   3'- cCCCCGC-----CCCGGGCcCGGgGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 2815 0.82 0.030004
Target:  5'- cGGGGGC-GGGCUCGGGCCCCGGg--- -3'
miRNA:   3'- -CCCCCGcCCCGGGCCCGGGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 2860 0.69 0.234409
Target:  5'- cGGGGaGgGGGGCgCGGGCgUCCGAg--- -3'
miRNA:   3'- -CCCC-CgCCCCGgGCCCG-GGGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 3124 0.8 0.040545
Target:  5'- cGGGucccgcggcagcGCGGGGCCCaGGGCCCCGGCg-- -3'
miRNA:   3'- cCCC------------CGCCCCGGG-CCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 3316 0.72 0.166475
Target:  5'- cGGGGaaGCGGGGCCCgcGGGUCCCuccGGCc-- -3'
miRNA:   3'- -CCCC--CGCCCCGGG--CCCGGGG---CUGaag -5'
5979 3' -68.3 NC_001806.1 + 3350 0.81 0.032355
Target:  5'- gGGGGGCuGGcGGgCCGGGCCCCGGCc-- -3'
miRNA:   3'- -CCCCCG-CC-CCgGGCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 4182 0.78 0.058908
Target:  5'- cGGGGGCgGGGGCCCGGcGCCgggccaCGGCUc- -3'
miRNA:   3'- -CCCCCG-CCCCGGGCC-CGGg-----GCUGAag -5'
5979 3' -68.3 NC_001806.1 + 4379 0.66 0.394667
Target:  5'- cGGGGGUccucgccgccgcccGGGGCuuGGGCg-CGGCcUCg -3'
miRNA:   3'- -CCCCCG--------------CCCCGggCCCGggGCUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 4440 0.7 0.224157
Target:  5'- cGGGGGCGGcguccGCCCggGGGCUgCCGGCg-- -3'
miRNA:   3'- -CCCCCGCCc----CGGG--CCCGG-GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 4744 0.71 0.186897
Target:  5'- -cGGGcCGGGGCCCGGuCgCCGGCggcgUCg -3'
miRNA:   3'- ccCCC-GCCCCGGGCCcGgGGCUGa---AG- -5'
5979 3' -68.3 NC_001806.1 + 4828 0.68 0.304353
Target:  5'- cGGGGCGGcgaGGCCgCGGGgUCgGGCgUCg -3'
miRNA:   3'- cCCCCGCC---CCGG-GCCCgGGgCUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 5089 0.69 0.249972
Target:  5'- gGGuGGGCGGcGGCCCgucggugGGGCCCgGGg--- -3'
miRNA:   3'- -CC-CCCGCC-CCGGG-------CCCGGGgCUgaag -5'
5979 3' -68.3 NC_001806.1 + 5231 0.68 0.310854
Target:  5'- gGGGGGagGGGGCgagacccaCGGaCCCCGACg-- -3'
miRNA:   3'- -CCCCCg-CCCCGg-------GCCcGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 5771 1.09 0.000284
Target:  5'- aGGGGGCGGGGCCCGGGCCCCGACUUCc -3'
miRNA:   3'- -CCCCCGCCCCGGGCCCGGGGCUGAAG- -5'
5979 3' -68.3 NC_001806.1 + 5957 0.69 0.23915
Target:  5'- aGGGGGCGGGGCCgcCGGGUaaaagaagugagaCgCGAagcguucgcaCUUCg -3'
miRNA:   3'- -CCCCCGCCCCGG--GCCCG-------------GgGCU----------GAAG- -5'
5979 3' -68.3 NC_001806.1 + 6078 0.71 0.195667
Target:  5'- cGGGGGC-GGGCCCGGGCggCGGg--- -3'
miRNA:   3'- -CCCCCGcCCCGGGCCCGggGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 6098 0.66 0.366635
Target:  5'- nGGGGGCGGGucucUCCGGcGCacauaaaggCCCGGCg-- -3'
miRNA:   3'- -CCCCCGCCCc---GGGCC-CG---------GGGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.