miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 151695 0.71 0.200185
Target:  5'- -cGGG-GGGGCCCGGGCugCCCGccgccaccGCUUUa -3'
miRNA:   3'- ccCCCgCCCCGGGCCCG--GGGC--------UGAAG- -5'
5979 3' -68.3 NC_001806.1 + 151446 0.7 0.209495
Target:  5'- gGGGGGCGGcggcggggcGGCCgCGGGCgcgcuCCUGACcgCg -3'
miRNA:   3'- -CCCCCGCC---------CCGG-GCCCG-----GGGCUGaaG- -5'
5979 3' -68.3 NC_001806.1 + 151295 0.76 0.087315
Target:  5'- gGGGGGCGGcGGCggugggCCGGGCCuCUGGCg-- -3'
miRNA:   3'- -CCCCCGCC-CCG------GGCCCGG-GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 151234 0.69 0.264063
Target:  5'- gGGGGGUGGGaGgggucagccccgcccCCCGGGCCCaCGcCg-- -3'
miRNA:   3'- -CCCCCGCCC-C---------------GGGCCCGGG-GCuGaag -5'
5979 3' -68.3 NC_001806.1 + 151100 0.7 0.209495
Target:  5'- cGGGGGUcgcgGGGGUCgcgggGGGCUCCGGCg-- -3'
miRNA:   3'- -CCCCCG----CCCCGGg----CCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 150892 0.71 0.200185
Target:  5'- -cGGGCacGGGCCuCGGGCCCCaGGCa-- -3'
miRNA:   3'- ccCCCGc-CCCGG-GCCCGGGG-CUGaag -5'
5979 3' -68.3 NC_001806.1 + 150611 0.69 0.236506
Target:  5'- -uGGGCGGuaacucccgcccaauGGgCCGGGCCCCGAagacUCg -3'
miRNA:   3'- ccCCCGCC---------------CCgGGCCCGGGGCUga--AG- -5'
5979 3' -68.3 NC_001806.1 + 150248 0.67 0.352064
Target:  5'- aGGGGCuuGGCCugcguCGGuGCCCCGggGCUUCc -3'
miRNA:   3'- cCCCCGccCCGG-----GCC-CGGGGC--UGAAG- -5'
5979 3' -68.3 NC_001806.1 + 149836 0.68 0.304353
Target:  5'- cGGGGCGGGGCUCcauggGGGUCguaugCGGCUg- -3'
miRNA:   3'- cCCCCGCCCCGGG-----CCCGGg----GCUGAag -5'
5979 3' -68.3 NC_001806.1 + 147890 0.72 0.171983
Target:  5'- gGGGGGCgggucuguugacaagGGGGCCCGuccGGCCCCucGGCc-- -3'
miRNA:   3'- -CCCCCG---------------CCCCGGGC---CCGGGG--CUGaag -5'
5979 3' -68.3 NC_001806.1 + 147797 0.66 0.397
Target:  5'- gGGGGGCGGaGCCUggcauGGGCgCCG-Cg-- -3'
miRNA:   3'- -CCCCCGCCcCGGG-----CCCGgGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 147732 0.73 0.137947
Target:  5'- cGGGGCcacggccgcgcgGGGGCgCgCGGGUCCCGACg-- -3'
miRNA:   3'- cCCCCG------------CCCCG-G-GCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 147684 0.76 0.08521
Target:  5'- cGGGGGcCGGGGCgcgggggCGGGCCCCGGaggCg -3'
miRNA:   3'- -CCCCC-GCCCCGg------GCCCGGGGCUgaaG- -5'
5979 3' -68.3 NC_001806.1 + 147507 0.67 0.352064
Target:  5'- aGGGGGCGGcGCCgCGGGagggCCCGuGCc-- -3'
miRNA:   3'- -CCCCCGCCcCGG-GCCCg---GGGC-UGaag -5'
5979 3' -68.3 NC_001806.1 + 146174 0.67 0.359298
Target:  5'- gGGGaucGGUGGucaggcaGCCCGGGCCgCGGCUc- -3'
miRNA:   3'- -CCC---CCGCCc------CGGGCCCGGgGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 144999 0.67 0.31746
Target:  5'- aGGGGCcccGGCCCGGGgCCCC-ACa-- -3'
miRNA:   3'- cCCCCGcc-CCGGGCCC-GGGGcUGaag -5'
5979 3' -68.3 NC_001806.1 + 144967 0.73 0.137947
Target:  5'- --uGGCGGcccGGCCCgGGGCCCCGGCg-- -3'
miRNA:   3'- cccCCGCC---CCGGG-CCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 144821 0.73 0.125429
Target:  5'- aGGGGcccccgaccGCGGcGGUCCGGGCCCCGuCc-- -3'
miRNA:   3'- -CCCC---------CGCC-CCGGGCCCGGGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 142022 0.68 0.291665
Target:  5'- aGGGcGGCGaGGaGCgCCGccGGCCCUGACg-- -3'
miRNA:   3'- -CCC-CCGC-CC-CG-GGC--CCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 140444 0.68 0.304353
Target:  5'- uGGGGGgGGGGCgguuacUCGGcCCCCGAg--- -3'
miRNA:   3'- -CCCCCgCCCCG------GGCCcGGGGCUgaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.