miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 9772 0.74 0.119572
Target:  5'- uGGGGGCgcguGGGGag-GGGCCCCGACg-- -3'
miRNA:   3'- -CCCCCG----CCCCgggCCCGGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 10400 0.7 0.224157
Target:  5'- gGGGaGGCGGGaGCCgggGGGUCCCG-CUg- -3'
miRNA:   3'- -CCC-CCGCCC-CGGg--CCCGGGGCuGAag -5'
5979 3' -68.3 NC_001806.1 + 11339 0.71 0.182644
Target:  5'- gGGGGGCGucGGaaGCCCagccgccccagcGGGCUCCGACUcuUCg -3'
miRNA:   3'- -CCCCCGC--CC--CGGG------------CCCGGGGCUGA--AG- -5'
5979 3' -68.3 NC_001806.1 + 11855 0.67 0.351346
Target:  5'- aGGGGCGGGuugguauacgcucGCCgGGGCCa-GACg-- -3'
miRNA:   3'- cCCCCGCCC-------------CGGgCCCGGggCUGaag -5'
5979 3' -68.3 NC_001806.1 + 13015 0.67 0.352064
Target:  5'- uGGGGCcuuGGGCCCGuGCcaCCCGGCg-- -3'
miRNA:   3'- cCCCCGc--CCCGGGCcCG--GGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 14055 0.72 0.158882
Target:  5'- uGGGGGcCGGGGCCaCGGauuuccugguuaGCCCgGugUUg -3'
miRNA:   3'- -CCCCC-GCCCCGG-GCC------------CGGGgCugAAg -5'
5979 3' -68.3 NC_001806.1 + 16875 0.68 0.284866
Target:  5'- cGGGGGCGGGGaguCCaGGCacgcgucCUCGGCUg- -3'
miRNA:   3'- -CCCCCGCCCCg--GGcCCG-------GGGCUGAag -5'
5979 3' -68.3 NC_001806.1 + 18317 0.66 0.412776
Target:  5'- aGGGGGuCGGGGCgaCCGGaCUCaCGGCc-- -3'
miRNA:   3'- -CCCCC-GCCCCG--GGCCcGGG-GCUGaag -5'
5979 3' -68.3 NC_001806.1 + 19111 0.71 0.191238
Target:  5'- cGGGGUgGGGGCCCGGGgcugcguuUCCCGGgUa- -3'
miRNA:   3'- cCCCCG-CCCCGGGCCC--------GGGGCUgAag -5'
5979 3' -68.3 NC_001806.1 + 20337 0.69 0.26754
Target:  5'- gGGGGGCGGcaaggcgggcGGCCCuuGGGCCgCCcGCcgUCc -3'
miRNA:   3'- -CCCCCGCC----------CCGGG--CCCGG-GGcUGa-AG- -5'
5979 3' -68.3 NC_001806.1 + 20466 0.77 0.068324
Target:  5'- cGGGaaguCGGGGCCCGGGCCCCGcCc-- -3'
miRNA:   3'- cCCCc---GCCCCGGGCCCGGGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 20564 0.69 0.261766
Target:  5'- cGGGGCGGGGCgCGGacccacccGCCCUcGCg-- -3'
miRNA:   3'- cCCCCGCCCCGgGCC--------CGGGGcUGaag -5'
5979 3' -68.3 NC_001806.1 + 20617 0.71 0.174393
Target:  5'- cGGauGGGCGGGGCCgGGGgUUCGACc-- -3'
miRNA:   3'- -CC--CCCGCCCCGGgCCCgGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 20646 0.67 0.31746
Target:  5'- -cGGGCcGcGGCCaCGGGcCCCCGGCg-- -3'
miRNA:   3'- ccCCCGcC-CCGG-GCCC-GGGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 20729 0.72 0.151603
Target:  5'- gGGGGGCggGGGGCCgGcGGCCUCcGCUg- -3'
miRNA:   3'- -CCCCCG--CCCCGGgC-CCGGGGcUGAag -5'
5979 3' -68.3 NC_001806.1 + 21772 0.7 0.219175
Target:  5'- -cGGGCGGGGUCCGucgagcgcGGCgCCGGCa-- -3'
miRNA:   3'- ccCCCGCCCCGGGC--------CCGgGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 22082 0.66 0.381616
Target:  5'- cGGGGCGGGugcuguacggcgGCCUGGGCgacagccgCCCgGGCcUCu -3'
miRNA:   3'- cCCCCGCCC------------CGGGCCCG--------GGG-CUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 22568 0.71 0.195667
Target:  5'- cGGGGGCcgcgGGGaGCCCcGGCgCCGGCg-- -3'
miRNA:   3'- -CCCCCG----CCC-CGGGcCCGgGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 22883 0.67 0.337211
Target:  5'- cGGGGCuggccGGGGCCCGGcccgccaGCCCCccgcGGCc-- -3'
miRNA:   3'- cCCCCG-----CCCCGGGCC-------CGGGG----CUGaag -5'
5979 3' -68.3 NC_001806.1 + 23101 0.72 0.162639
Target:  5'- uGGucGcCGGGGCCCuGGGCCCCGcGCUg- -3'
miRNA:   3'- -CCccC-GCCCCGGG-CCCGGGGC-UGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.