Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 90162 | 0.67 | 0.927336 |
|
Target: 5'- cCGGgccccUGGGAUACGuGUacgCUCGCGCGu -3' miRNA: 3'- -GCCauu--ACUCUAUGCuCG---GGGCGCGC- -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 38194 | 0.67 | 0.927336 |
|
Target: 5'- uGGU--UGAGGaucgUugGGGCCCUGcCGCu -3' miRNA: 3'- gCCAuuACUCU----AugCUCGGGGC-GCGc -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 65626 | 0.67 | 0.927336 |
|
Target: 5'- uGGUGgccGUGGGcgagAgGGGCCCCG-GCGg -3' miRNA: 3'- gCCAU---UACUCua--UgCUCGGGGCgCGC- -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 38097 | 0.67 | 0.920243 |
|
Target: 5'- uCGGUG--GGGGUugGAGgcgggccaccuugcCCCCGUGCu -3' miRNA: 3'- -GCCAUuaCUCUAugCUC--------------GGGGCGCGc -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 47341 | 0.67 | 0.920243 |
|
Target: 5'- uGGgcuuuagc-GCGGGCCCCGCGCu -3' miRNA: 3'- gCCauuacucuaUGCUCGGGGCGCGc -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 23101 | 0.67 | 0.916256 |
|
Target: 5'- uGGUcgccgGGGcccUGGGCCCCGCGCu -3' miRNA: 3'- gCCAuua--CUCuauGCUCGGGGCGCGc -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 32199 | 0.67 | 0.914511 |
|
Target: 5'- cCGGgggacGUGGGGUuggugugcaaaggcACGcGCaCCCGCGCGg -3' miRNA: 3'- -GCCau---UACUCUA--------------UGCuCG-GGGCGCGC- -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 92930 | 0.67 | 0.910358 |
|
Target: 5'- gCGGgccugGAGGc-CGGGgCCCGCGCGc -3' miRNA: 3'- -GCCauua-CUCUauGCUCgGGGCGCGC- -5' |
|||||||
| 5979 | 5' | -54.8 | NC_001806.1 | + | 5806 | 1.08 | 0.004596 |
|
Target: 5'- gCGGUAAUGAGAUACGAGCCCCGCGCGc -3' miRNA: 3'- -GCCAUUACUCUAUGCUCGGGGCGCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home