miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 95953 0.67 0.967973
Target:  5'- ----gGGGGCGggGggcuCGGGUGCUGa -3'
miRNA:   3'- aauaaUCCCGCuuCac--GCUCGUGACc -5'
5980 5' -51.5 NC_001806.1 + 25919 0.67 0.967973
Target:  5'- -----cGGGCGgcGUGCGcGCGCgcggcGGg -3'
miRNA:   3'- aauaauCCCGCuuCACGCuCGUGa----CC- -5'
5980 5' -51.5 NC_001806.1 + 12657 0.67 0.967973
Target:  5'- ----aAGGGCu-GGUGCGAGgacgGCUGGu -3'
miRNA:   3'- aauaaUCCCGcuUCACGCUCg---UGACC- -5'
5980 5' -51.5 NC_001806.1 + 2660 0.67 0.967973
Target:  5'- ----cAGGGCGgcGgccGCGGGCgccgccgugugGCUGGg -3'
miRNA:   3'- aauaaUCCCGCuuCa--CGCUCG-----------UGACC- -5'
5980 5' -51.5 NC_001806.1 + 2835 0.67 0.964658
Target:  5'- ----gGGGGCGugGAGgggggcGCGGGCGCgGGg -3'
miRNA:   3'- aauaaUCCCGC--UUCa-----CGCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 95400 0.67 0.964658
Target:  5'- ----gGGGGCGggG-GCGAGgACg-- -3'
miRNA:   3'- aauaaUCCCGCuuCaCGCUCgUGacc -5'
5980 5' -51.5 NC_001806.1 + 119050 0.68 0.95329
Target:  5'- ---gUGGGGCucGggG-GCGAGCugUGc -3'
miRNA:   3'- aauaAUCCCG--CuuCaCGCUCGugACc -5'
5980 5' -51.5 NC_001806.1 + 41850 0.68 0.949009
Target:  5'- -----cGGGCGcguacGUGCGAGCGCgcaGGu -3'
miRNA:   3'- aauaauCCCGCuu---CACGCUCGUGa--CC- -5'
5980 5' -51.5 NC_001806.1 + 81696 0.68 0.944475
Target:  5'- -gAUUAGGGCGGcGGUGCGuccuuuuuuauaGGCGCg-- -3'
miRNA:   3'- aaUAAUCCCGCU-UCACGC------------UCGUGacc -5'
5980 5' -51.5 NC_001806.1 + 5662 0.68 0.944475
Target:  5'- -----uGGGCGggGcGCGAGgGCgGGu -3'
miRNA:   3'- aauaauCCCGCuuCaCGCUCgUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 127751 0.68 0.944007
Target:  5'- -----cGGGCGGgcugccgGGUGCGGGcCugUGGc -3'
miRNA:   3'- aauaauCCCGCU-------UCACGCUC-GugACC- -5'
5980 5' -51.5 NC_001806.1 + 135112 0.69 0.939685
Target:  5'- ----gGGGGCGggG-GC-AGCGCUGc -3'
miRNA:   3'- aauaaUCCCGCuuCaCGcUCGUGACc -5'
5980 5' -51.5 NC_001806.1 + 10392 0.69 0.939191
Target:  5'- ----gGGGGCGggGggagGCGGGagccgggggguccCGCUGGc -3'
miRNA:   3'- aauaaUCCCGCuuCa---CGCUC-------------GUGACC- -5'
5980 5' -51.5 NC_001806.1 + 74962 0.69 0.929329
Target:  5'- -----cGGGCGGAcauGUGgGGGCuGCUGGg -3'
miRNA:   3'- aauaauCCCGCUU---CACgCUCG-UGACC- -5'
5980 5' -51.5 NC_001806.1 + 92921 0.69 0.917931
Target:  5'- ----cAGGGCGGg--GCGGGC-CUGGa -3'
miRNA:   3'- aauaaUCCCGCUucaCGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 145545 0.69 0.917931
Target:  5'- cUGggGGGGgGGAGUGCGGGgGaggGGg -3'
miRNA:   3'- aAUaaUCCCgCUUCACGCUCgUga-CC- -5'
5980 5' -51.5 NC_001806.1 + 20247 0.7 0.911843
Target:  5'- aUAUUGGGaCGAAGUGCGAaCGCUu- -3'
miRNA:   3'- aAUAAUCCcGCUUCACGCUcGUGAcc -5'
5980 5' -51.5 NC_001806.1 + 14379 0.7 0.911843
Target:  5'- ----gGGGGCuGggGUGagGGGaCACUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCACg-CUC-GUGACC- -5'
5980 5' -51.5 NC_001806.1 + 99640 0.7 0.898895
Target:  5'- ----gGGGGCGGug-GCGGGC-CUGGc -3'
miRNA:   3'- aauaaUCCCGCUucaCGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 34304 0.71 0.877593
Target:  5'- --uUUAGcGGCGggGggcgGCGcgccggacggGGCGCUGGa -3'
miRNA:   3'- aauAAUC-CCGCuuCa---CGC----------UCGUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.