miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 45511 0.66 0.985256
Target:  5'- ---gUGGGGUGAggGGUGgGGGUGgaGGg -3'
miRNA:   3'- aauaAUCCCGCU--UCACgCUCGUgaCC- -5'
5980 5' -51.5 NC_001806.1 + 133150 0.66 0.985256
Target:  5'- ----gGGGGCGAugggGGUGCGuu--CUGGg -3'
miRNA:   3'- aauaaUCCCGCU----UCACGCucguGACC- -5'
5980 5' -51.5 NC_001806.1 + 25413 0.66 0.984142
Target:  5'- ----gGGGGCGAGGggcggugguggugcGCGGGCGCccccGGa -3'
miRNA:   3'- aauaaUCCCGCUUCa-------------CGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 6454 0.66 0.983364
Target:  5'- ----gGGGGCGGAGgagGgGGGaCGCgGGg -3'
miRNA:   3'- aauaaUCCCGCUUCa--CgCUC-GUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 6498 0.66 0.983364
Target:  5'- ----gGGGGCGGAGgagGgGGGaCGCgGGg -3'
miRNA:   3'- aauaaUCCCGCUUCa--CgCUC-GUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 6542 0.66 0.983364
Target:  5'- ----gGGGGCGGAGgagGgGGGaCGCgGGg -3'
miRNA:   3'- aauaaUCCCGCUUCa--CgCUC-GUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 42638 0.66 0.981295
Target:  5'- ----cGGcGGCGucgcguccGGUGCGGGgGCUGGc -3'
miRNA:   3'- aauaaUC-CCGCu-------UCACGCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 71935 0.66 0.980638
Target:  5'- ----gGGGGCG-AGUggacgcgcgcgaccGCGGGCcCUGGg -3'
miRNA:   3'- aauaaUCCCGCuUCA--------------CGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 82227 0.66 0.979038
Target:  5'- ----gGGGGCGuuGUGUGGGCGaUGa -3'
miRNA:   3'- aauaaUCCCGCuuCACGCUCGUgACc -5'
5980 5' -51.5 NC_001806.1 + 20334 0.66 0.979038
Target:  5'- aUGggGGGGCGGcaAG-GCGGGCGgcccUUGGg -3'
miRNA:   3'- aAUaaUCCCGCU--UCaCGCUCGU----GACC- -5'
5980 5' -51.5 NC_001806.1 + 20681 0.66 0.979038
Target:  5'- ----cGGGGCGggGU-CGuGCAUaaUGGa -3'
miRNA:   3'- aauaaUCCCGCuuCAcGCuCGUG--ACC- -5'
5980 5' -51.5 NC_001806.1 + 110980 0.66 0.979038
Target:  5'- -cGUUAcguGGGCG--GUGCGGGCGCUc- -3'
miRNA:   3'- aaUAAU---CCCGCuuCACGCUCGUGAcc -5'
5980 5' -51.5 NC_001806.1 + 99671 0.66 0.978802
Target:  5'- ---cUGGGGCauacgggGGAGUGgGGGCAUgGGa -3'
miRNA:   3'- aauaAUCCCG-------CUUCACgCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 83817 0.67 0.976586
Target:  5'- ----gGGGGCGggGU-CG-GCGCgGGa -3'
miRNA:   3'- aauaaUCCCGCuuCAcGCuCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 33652 0.67 0.976586
Target:  5'- ----gGGGGgGggGUgucGCGGGCcgucuGCUGGc -3'
miRNA:   3'- aauaaUCCCgCuuCA---CGCUCG-----UGACC- -5'
5980 5' -51.5 NC_001806.1 + 151197 0.67 0.975018
Target:  5'- ----gAGGGCGAGGcGCGgcggaaggcggaaggGGCGCgagGGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGC---------------UCGUGa--CC- -5'
5980 5' -51.5 NC_001806.1 + 45319 0.67 0.97393
Target:  5'- ------cGGCGAGGaggGCGGGCGCgaugGGa -3'
miRNA:   3'- aauaaucCCGCUUCa--CGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 94270 0.67 0.97393
Target:  5'- -----uGGcGCGAGG-GCGAGCGgcucCUGGg -3'
miRNA:   3'- aauaauCC-CGCUUCaCGCUCGU----GACC- -5'
5980 5' -51.5 NC_001806.1 + 26829 0.67 0.97393
Target:  5'- -----cGGGCGggGaGgGGGCGCcGGa -3'
miRNA:   3'- aauaauCCCGCuuCaCgCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 95953 0.67 0.967973
Target:  5'- ----gGGGGCGggGggcuCGGGUGCUGa -3'
miRNA:   3'- aauaaUCCCGCuuCac--GCUCGUGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.