miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 25630 0.66 0.988542
Target:  5'- ----gAGGGCuGggGcugGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25598 0.66 0.988542
Target:  5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25566 0.66 0.988542
Target:  5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25534 0.66 0.988542
Target:  5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25379 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25345 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25277 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25107 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25141 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25175 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25209 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25243 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25311 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 141327 0.67 0.967973
Target:  5'- ----aGGGGCGAcgGGUGCGAaaacuugaggacGCAaUGGa -3'
miRNA:   3'- aauaaUCCCGCU--UCACGCU------------CGUgACC- -5'
5980 5' -51.5 NC_001806.1 + 26829 0.67 0.97393
Target:  5'- -----cGGGCGggGaGgGGGCGCcGGa -3'
miRNA:   3'- aauaauCCCGCuuCaCgCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 94270 0.67 0.97393
Target:  5'- -----uGGcGCGAGG-GCGAGCGgcucCUGGg -3'
miRNA:   3'- aauaauCC-CGCUUCaCGCUCGU----GACC- -5'
5980 5' -51.5 NC_001806.1 + 45319 0.67 0.97393
Target:  5'- ------cGGCGAGGaggGCGGGCGCgaugGGa -3'
miRNA:   3'- aauaaucCCGCUUCa--CGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 151197 0.67 0.975018
Target:  5'- ----gAGGGCGAGGcGCGgcggaaggcggaaggGGCGCgagGGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGC---------------UCGUGa--CC- -5'
5980 5' -51.5 NC_001806.1 + 33652 0.67 0.976586
Target:  5'- ----gGGGGgGggGUgucGCGGGCcgucuGCUGGc -3'
miRNA:   3'- aauaaUCCCgCuuCA---CGCUCG-----UGACC- -5'
5980 5' -51.5 NC_001806.1 + 95953 0.67 0.967973
Target:  5'- ----gGGGGCGggGggcuCGGGUGCUGa -3'
miRNA:   3'- aauaaUCCCGCuuCac--GCUCGUGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.