Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 34001 | 0.66 | 0.985256 |
Target: 5'- ----aGGGGCGggG-GCGuGgGCgGGg -3' miRNA: 3'- aauaaUCCCGCuuCaCGCuCgUGaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25175 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25141 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25107 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 79263 | 0.66 | 0.988393 |
Target: 5'- cUUGUUGGGGCGGAGgGCucguuggggcccgGaAGC-CUGGc -3' miRNA: 3'- -AAUAAUCCCGCUUCaCG-------------C-UCGuGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 57010 | 0.66 | 0.986978 |
Target: 5'- ----aGGcGGCGcccAGUGCcaGGCACUGGg -3' miRNA: 3'- aauaaUC-CCGCu--UCACGc-UCGUGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 49859 | 0.66 | 0.986978 |
Target: 5'- ----cAGGGCGAGGcGUuGGC-CUGGu -3' miRNA: 3'- aauaaUCCCGCUUCaCGcUCGuGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 133150 | 0.66 | 0.985256 |
Target: 5'- ----gGGGGCGAugggGGUGCGuu--CUGGg -3' miRNA: 3'- aauaaUCCCGCU----UCACGCucguGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 45511 | 0.66 | 0.985256 |
Target: 5'- ---gUGGGGUGAggGGUGgGGGUGgaGGg -3' miRNA: 3'- aauaAUCCCGCU--UCACgCUCGUgaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25209 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25243 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25311 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 106525 | 0.66 | 0.988542 |
Target: 5'- -----cGGGgGAgcuggugcucgGGUGCGAugccGCGCUGGu -3' miRNA: 3'- aauaauCCCgCU-----------UCACGCU----CGUGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25630 | 0.66 | 0.988542 |
Target: 5'- ----gAGGGCuGggGcugGgGAGgGCUGGg -3' miRNA: 3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25598 | 0.66 | 0.988542 |
Target: 5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3' miRNA: 3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25566 | 0.66 | 0.988542 |
Target: 5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3' miRNA: 3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25534 | 0.66 | 0.988542 |
Target: 5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3' miRNA: 3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25379 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25345 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25277 | 0.66 | 0.988542 |
Target: 5'- ----gGGGGCGAGGgGCGGGagg-GGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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