miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 2660 0.67 0.967973
Target:  5'- ----cAGGGCGgcGgccGCGGGCgccgccgugugGCUGGg -3'
miRNA:   3'- aauaaUCCCGCuuCa--CGCUCG-----------UGACC- -5'
5980 5' -51.5 NC_001806.1 + 2835 0.67 0.964658
Target:  5'- ----gGGGGCGugGAGgggggcGCGGGCGCgGGg -3'
miRNA:   3'- aauaaUCCCGC--UUCa-----CGCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 5662 0.68 0.944475
Target:  5'- -----uGGGCGggGcGCGAGgGCgGGu -3'
miRNA:   3'- aauaauCCCGCuuCaCGCUCgUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 6025 1.08 0.0077
Target:  5'- aUUAUUAGGGCGAAGUGCGAGCACUGGc -3'
miRNA:   3'- -AAUAAUCCCGCUUCACGCUCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 6454 0.66 0.983364
Target:  5'- ----gGGGGCGGAGgagGgGGGaCGCgGGg -3'
miRNA:   3'- aauaaUCCCGCUUCa--CgCUC-GUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 6498 0.66 0.983364
Target:  5'- ----gGGGGCGGAGgagGgGGGaCGCgGGg -3'
miRNA:   3'- aauaaUCCCGCUUCa--CgCUC-GUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 6542 0.66 0.983364
Target:  5'- ----gGGGGCGGAGgagGgGGGaCGCgGGg -3'
miRNA:   3'- aauaaUCCCGCUUCa--CgCUC-GUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 10392 0.69 0.939191
Target:  5'- ----gGGGGCGggGggagGCGGGagccgggggguccCGCUGGc -3'
miRNA:   3'- aauaaUCCCGCuuCa---CGCUC-------------GUGACC- -5'
5980 5' -51.5 NC_001806.1 + 12657 0.67 0.967973
Target:  5'- ----aAGGGCu-GGUGCGAGgacgGCUGGu -3'
miRNA:   3'- aauaaUCCCGcuUCACGCUCg---UGACC- -5'
5980 5' -51.5 NC_001806.1 + 14379 0.7 0.911843
Target:  5'- ----gGGGGCuGggGUGagGGGaCACUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCACg-CUC-GUGACC- -5'
5980 5' -51.5 NC_001806.1 + 20247 0.7 0.911843
Target:  5'- aUAUUGGGaCGAAGUGCGAaCGCUu- -3'
miRNA:   3'- aAUAAUCCcGCUUCACGCUcGUGAcc -5'
5980 5' -51.5 NC_001806.1 + 20334 0.66 0.979038
Target:  5'- aUGggGGGGCGGcaAG-GCGGGCGgcccUUGGg -3'
miRNA:   3'- aAUaaUCCCGCU--UCaCGCUCGU----GACC- -5'
5980 5' -51.5 NC_001806.1 + 20681 0.66 0.979038
Target:  5'- ----cGGGGCGggGU-CGuGCAUaaUGGa -3'
miRNA:   3'- aauaaUCCCGCuuCAcGCuCGUG--ACC- -5'
5980 5' -51.5 NC_001806.1 + 24898 0.72 0.801568
Target:  5'- ----gGGGGCGGAG-GCGGGC-UUGGc -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 25107 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25141 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25175 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25209 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25243 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25277 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.