miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 151197 0.67 0.975018
Target:  5'- ----gAGGGCGAGGcGCGgcggaaggcggaaggGGCGCgagGGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGC---------------UCGUGa--CC- -5'
5980 5' -51.5 NC_001806.1 + 147791 0.71 0.854147
Target:  5'- ----cGGGGCGggGgGCGgAGC-CUGGc -3'
miRNA:   3'- aauaaUCCCGCuuCaCGC-UCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 145545 0.69 0.917931
Target:  5'- cUGggGGGGgGGAGUGCGGGgGaggGGg -3'
miRNA:   3'- aAUaaUCCCgCUUCACGCUCgUga-CC- -5'
5980 5' -51.5 NC_001806.1 + 143329 0.71 0.845884
Target:  5'- ----gAGGGgGggG-GgGGGCGCUGGu -3'
miRNA:   3'- aauaaUCCCgCuuCaCgCUCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 141327 0.67 0.967973
Target:  5'- ----aGGGGCGAcgGGUGCGAaaacuugaggacGCAaUGGa -3'
miRNA:   3'- aauaaUCCCGCU--UCACGCU------------CGUgACC- -5'
5980 5' -51.5 NC_001806.1 + 135112 0.69 0.939685
Target:  5'- ----gGGGGCGggG-GC-AGCGCUGc -3'
miRNA:   3'- aauaaUCCCGCuuCaCGcUCGUGACc -5'
5980 5' -51.5 NC_001806.1 + 133150 0.66 0.985256
Target:  5'- ----gGGGGCGAugggGGUGCGuu--CUGGg -3'
miRNA:   3'- aauaaUCCCGCU----UCACGCucguGACC- -5'
5980 5' -51.5 NC_001806.1 + 127751 0.68 0.944007
Target:  5'- -----cGGGCGGgcugccgGGUGCGGGcCugUGGc -3'
miRNA:   3'- aauaauCCCGCU-------UCACGCUC-GugACC- -5'
5980 5' -51.5 NC_001806.1 + 119050 0.68 0.95329
Target:  5'- ---gUGGGGCucGggG-GCGAGCugUGc -3'
miRNA:   3'- aauaAUCCCG--CuuCaCGCUCGugACc -5'
5980 5' -51.5 NC_001806.1 + 117070 0.66 0.985256
Target:  5'- ----gGGGGUGggG-GUGGGCAUccagGGa -3'
miRNA:   3'- aauaaUCCCGCuuCaCGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 110980 0.66 0.979038
Target:  5'- -cGUUAcguGGGCG--GUGCGGGCGCUc- -3'
miRNA:   3'- aaUAAU---CCCGCuuCACGCUCGUGAcc -5'
5980 5' -51.5 NC_001806.1 + 106525 0.66 0.988542
Target:  5'- -----cGGGgGAgcuggugcucgGGUGCGAugccGCGCUGGu -3'
miRNA:   3'- aauaauCCCgCU-----------UCACGCU----CGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 99671 0.66 0.978802
Target:  5'- ---cUGGGGCauacgggGGAGUGgGGGCAUgGGa -3'
miRNA:   3'- aauaAUCCCG-------CUUCACgCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 99640 0.7 0.898895
Target:  5'- ----gGGGGCGGug-GCGGGC-CUGGc -3'
miRNA:   3'- aauaaUCCCGCUucaCGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 95953 0.67 0.967973
Target:  5'- ----gGGGGCGggGggcuCGGGUGCUGa -3'
miRNA:   3'- aauaaUCCCGCuuCac--GCUCGUGACc -5'
5980 5' -51.5 NC_001806.1 + 95400 0.67 0.964658
Target:  5'- ----gGGGGCGggG-GCGAGgACg-- -3'
miRNA:   3'- aauaaUCCCGCuuCaCGCUCgUGacc -5'
5980 5' -51.5 NC_001806.1 + 94270 0.67 0.97393
Target:  5'- -----uGGcGCGAGG-GCGAGCGgcucCUGGg -3'
miRNA:   3'- aauaauCC-CGCUUCaCGCUCGU----GACC- -5'
5980 5' -51.5 NC_001806.1 + 92921 0.69 0.917931
Target:  5'- ----cAGGGCGGg--GCGGGC-CUGGa -3'
miRNA:   3'- aauaaUCCCGCUucaCGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 83817 0.67 0.976586
Target:  5'- ----gGGGGCGggGU-CG-GCGCgGGa -3'
miRNA:   3'- aauaaUCCCGCuuCAcGCuCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 82227 0.66 0.979038
Target:  5'- ----gGGGGCGuuGUGUGGGCGaUGa -3'
miRNA:   3'- aauaaUCCCGCuuCACGCUCGUgACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.