Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 6025 | 1.08 | 0.0077 |
Target: 5'- aUUAUUAGGGCGAAGUGCGAGCACUGGc -3' miRNA: 3'- -AAUAAUCCCGCUUCACGCUCGUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 31365 | 0.77 | 0.563648 |
Target: 5'- uUUGUggggAGGGgGggGU-CGGGCGCUGGg -3' miRNA: 3'- -AAUAa---UCCCgCuuCAcGCUCGUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 81666 | 0.75 | 0.648727 |
Target: 5'- ---gUGGGGCGAAG-GCGuccggaacGCACUGGc -3' miRNA: 3'- aauaAUCCCGCUUCaCGCu-------CGUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 24898 | 0.72 | 0.801568 |
Target: 5'- ----gGGGGCGGAG-GCGGGC-UUGGc -3' miRNA: 3'- aauaaUCCCGCUUCaCGCUCGuGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 143329 | 0.71 | 0.845884 |
Target: 5'- ----gAGGGgGggG-GgGGGCGCUGGu -3' miRNA: 3'- aauaaUCCCgCuuCaCgCUCGUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 147791 | 0.71 | 0.854147 |
Target: 5'- ----cGGGGCGggGgGCGgAGC-CUGGc -3' miRNA: 3'- aauaaUCCCGCuuCaCGC-UCGuGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 72499 | 0.71 | 0.86219 |
Target: 5'- ----cGGGGCGAGaucGCGGGC-CUGGg -3' miRNA: 3'- aauaaUCCCGCUUca-CGCUCGuGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 45347 | 0.71 | 0.86219 |
Target: 5'- ----gGGGGCGcgcGGUGCGAGacccaaaaCACUGGc -3' miRNA: 3'- aauaaUCCCGCu--UCACGCUC--------GUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 34304 | 0.71 | 0.877593 |
Target: 5'- --uUUAGcGGCGggGggcgGCGcgccggacggGGCGCUGGa -3' miRNA: 3'- aauAAUC-CCGCuuCa---CGC----------UCGUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 99640 | 0.7 | 0.898895 |
Target: 5'- ----gGGGGCGGug-GCGGGC-CUGGc -3' miRNA: 3'- aauaaUCCCGCUucaCGCUCGuGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 20247 | 0.7 | 0.911843 |
Target: 5'- aUAUUGGGaCGAAGUGCGAaCGCUu- -3' miRNA: 3'- aAUAAUCCcGCUUCACGCUcGUGAcc -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 14379 | 0.7 | 0.911843 |
Target: 5'- ----gGGGGCuGggGUGagGGGaCACUGGg -3' miRNA: 3'- aauaaUCCCG-CuuCACg-CUC-GUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 145545 | 0.69 | 0.917931 |
Target: 5'- cUGggGGGGgGGAGUGCGGGgGaggGGg -3' miRNA: 3'- aAUaaUCCCgCUUCACGCUCgUga-CC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 92921 | 0.69 | 0.917931 |
Target: 5'- ----cAGGGCGGg--GCGGGC-CUGGa -3' miRNA: 3'- aauaaUCCCGCUucaCGCUCGuGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 74962 | 0.69 | 0.929329 |
Target: 5'- -----cGGGCGGAcauGUGgGGGCuGCUGGg -3' miRNA: 3'- aauaauCCCGCUU---CACgCUCG-UGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 10392 | 0.69 | 0.939191 |
Target: 5'- ----gGGGGCGggGggagGCGGGagccgggggguccCGCUGGc -3' miRNA: 3'- aauaaUCCCGCuuCa---CGCUC-------------GUGACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 135112 | 0.69 | 0.939685 |
Target: 5'- ----gGGGGCGggG-GC-AGCGCUGc -3' miRNA: 3'- aauaaUCCCGCuuCaCGcUCGUGACc -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 127751 | 0.68 | 0.944007 |
Target: 5'- -----cGGGCGGgcugccgGGUGCGGGcCugUGGc -3' miRNA: 3'- aauaauCCCGCU-------UCACGCUC-GugACC- -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 81696 | 0.68 | 0.944475 |
Target: 5'- -gAUUAGGGCGGcGGUGCGuccuuuuuuauaGGCGCg-- -3' miRNA: 3'- aaUAAUCCCGCU-UCACGC------------UCGUGacc -5' |
|||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 5662 | 0.68 | 0.944475 |
Target: 5'- -----uGGGCGggGcGCGAGgGCgGGu -3' miRNA: 3'- aauaauCCCGCuuCaCGCUCgUGaCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home